- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLA: alpha-D-galactopyranose(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 17 residues within 4Å:- Chain A: T.77, S.79, W.106, Y.109, V.129, S.131, P.134, L.135, G.136, G.137, G.138, L.139, S.140, S.141, S.142, L.145
- Ligands: MG.6
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:T.77, A:T.77, A:S.79, A:G.136, A:G.137, A:G.138, A:S.140, A:S.141, A:S.142, A:S.142
- Water bridges: A:R.37, A:T.78, A:Y.109, A:S.131, A:P.134, A:L.139, A:S.140, A:A.143
ADP.9: 18 residues within 4Å:- Chain B: T.77, S.79, A.82, W.106, Y.109, V.129, S.131, P.134, L.135, G.136, G.137, G.138, L.139, S.140, S.141, S.142, L.145
- Ligands: MG.13
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:T.77, B:S.79, B:S.79, B:G.136, B:G.137, B:G.138, B:L.139, B:S.140, B:S.141, B:S.142, B:S.142
- Water bridges: B:S.131, B:P.134, B:E.174
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 2 residues within 4Å:- Chain A: Q.172, H.175
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.172, A:Q.172
- Salt bridges: A:H.175
PO4.4: 1 residues within 4Å:- Chain A: R.267
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.267
PO4.5: 3 residues within 4Å:- Chain A: H.363, H.367, E.370
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:H.363, A:H.367
PO4.10: 2 residues within 4Å:- Chain B: R.267, R.279
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.267, B:R.279
PO4.11: 3 residues within 4Å:- Chain B: H.363, H.367, E.370
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:H.363, B:H.367
PO4.12: 2 residues within 4Å:- Chain B: H.229, S.230
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.230, B:L.231
- Salt bridges: B:H.229
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.6: 4 residues within 4Å:- Chain A: S.142, E.174, D.186
- Ligands: ADP.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:S.142, H2O.1, H2O.1, H2O.3
MG.13: 5 residues within 4Å:- Chain B: S.142, E.174, D.186
- Ligands: GLA.8, ADP.9
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:S.142, B:D.186, H2O.5, H2O.6, H2O.6
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, L. et al., Structure-Based Optimization of Small Molecule Human Galactokinase Inhibitors. J.Med.Chem. (2021)
- Release Date
- 2021-09-29
- Peptides
- Galactokinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLA: alpha-D-galactopyranose(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, L. et al., Structure-Based Optimization of Small Molecule Human Galactokinase Inhibitors. J.Med.Chem. (2021)
- Release Date
- 2021-09-29
- Peptides
- Galactokinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
D