SMTL ID : 7rcq.1

Crystal structure of triosephosphate isomerase from Ktedonobacter racemifer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

6 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 9 residues within 4Å: Chain A: N.15, K.17, H.110, E.182, I.187, L.247, V.248, G.249 Ligands: NO3.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.15, A:K.17, A:H.110, A:L.247 Water bridges: A:S.228 NO3.2: 4 residues within 4Å: Chain A: A.167, N.168, I.212, Y.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.168 Water bridges: A:R.163 NO3.3: 9 residues within 4Å: Chain A: K.17, A.186, I.187, G.188, G.227, S.228, G.249, G.250 Ligands: NO3.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.17, A:G.188, A:S.228, A:G.249, A:G.250 Water bridges: A:V.229, A:V.229, A:V.229 NO3.4: 9 residues within 4Å: Chain B: N.15, K.17, H.110, E.182, I.187, L.247, V.248, G.249 Ligands: NO3.6 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.15, B:K.17, B:H.110, B:L.247 Water bridges: B:S.228 NO3.5: 4 residues within 4Å: Chain B: A.167, N.168, I.212, Y.213 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.168, B:Y.213 Water bridges: B:R.163 NO3.6: 9 residues within 4Å: Chain B: K.17, A.186, I.187, G.188, G.227, S.228, G.249, G.250 Ligands: NO3.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.17, B:G.188, B:S.228, B:G.249, B:G.250 Water bridges: B:V.229, B:V.229, B:V.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vickers, C.J. et al., Crystal structure of Triosephosphate isomerase from Ktedonobacter racemifer. To Be Published

Release Date

2022-07-13

Peptides

Triosephosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Triosephosphate isomerase