SMTL ID : 7rdv.1

TFH TCR bound to MHC Class II IAd presenting aggrecan epitope

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.118, E.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.118 NAG.2: 1 residues within 4Å: Chain A: N.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, J.J. et al., TFH TCR bound to MHC Class II IAd presenting aggrecan epitope. To Be Published

Release Date

2022-07-27

Peptides

H-2 class II histocompatibility antigen, A-D alpha chain: A
H-2 class II histocompatibility antigen, A-D beta chain: B
Aggrecan core peptide: C
TFH TCR alpha chain: D
TFH TCR beta chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
C

E
D

H-2 class II histocompatibility antigen, A-D alpha chain

H-2 class II histocompatibility antigen, A-D beta chain

Aggrecan core peptide

TFH TCR alpha chain

TFH TCR beta chain