- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-2-1-2-mer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: D.208, N.209, D.218
- Ligands: ADP.4
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.218
MG.11: 5 residues within 4Å:- Chain E: K.292, S.293, R.447
- Ligands: ADP.10, AF3.12
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:S.293
MG.18: 6 residues within 4Å:- Chain F: G.291, K.292, S.293, H.294, K.324
- Ligands: ADP.17
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:S.293
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.4: 15 residues within 4Å:- Chain A: F.35, K.50, N.52, K.73, R.74, H.75, N.79, R.116, D.208, N.209, Y.217, D.218, G.220, D.221
- Ligands: MG.3
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:N.52, A:K.73, A:H.75, A:N.79, A:D.208, A:D.218, A:G.220
- Salt bridges: A:K.73, A:K.73, A:R.116
ADP.10: 17 residues within 4Å:- Chain E: E.265, P.287, P.288, G.289, T.290, G.291, K.292, S.293, H.294, K.324, K.327, R.446, R.447, E.544, K.573
- Ligands: MG.11, AF3.12
18 PLIP interactions:18 interactions with chain E- Hydrogen bonds: E:G.289, E:T.290, E:T.290, E:G.291, E:K.292, E:S.293, E:S.293, E:S.293, E:H.294, E:H.294, E:R.446, E:E.544
- Salt bridges: E:K.292, E:K.324, E:R.447, E:R.447
- pi-Stacking: E:H.294
- pi-Cation interactions: E:R.446
ADP.17: 12 residues within 4Å:- Chain F: E.265, F.266, G.289, T.290, G.291, K.292, H.294, K.324, R.446, E.544
- Ligands: MG.18, AF3.19
8 PLIP interactions:8 interactions with chain F- Hydrogen bonds: F:E.265, F:G.289, F:T.290, F:G.291, F:K.292, F:E.544
- Salt bridges: F:K.292, F:K.324
- 3 x 1N7: CHAPSO(Non-covalent)
1N7.5: 9 residues within 4Å:- Chain A: V.202, G.203, V.204, D.221, F.222, I.223, V.231, V.233, R.733
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.202, A:V.204, A:I.223
1N7.6: 8 residues within 4Å:- Chain A: R.197, G.230, V.231, P.232, K.288, Y.289, W.290, D.291
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.231, A:Y.289, A:D.291
- Hydrogen bonds: A:K.288
1N7.13: 18 residues within 4Å:- Chain A: Y.903, S.904, V.905
- Chain D: A.64, A.67, M.68, M.71
- Chain E: V.49, N.50, L.69, G.71, M.72, Y.74, F.85, F.94, G.95, L.96, K.98
7 PLIP interactions:2 interactions with chain A, 1 interactions with chain D, 4 interactions with chain E- Hydrophobic interactions: A:Y.903, A:V.905, D:A.67, E:V.49, E:F.94
- Hydrogen bonds: E:G.71, E:Y.74
- 2 x AF3: ALUMINUM FLUORIDE(Non-covalent)
AF3.12: 11 residues within 4Å:- Chain E: P.288, G.289, K.292, S.293, E.379, Q.408, R.447, G.542, R.571
- Ligands: ADP.10, MG.11
No protein-ligand interaction detected (PLIP)AF3.19: 10 residues within 4Å:- Chain F: P.287, P.288, G.289, T.290, G.291, K.292, Q.408, R.447, R.571
- Ligands: ADP.17
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, J. et al., Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol. (2022)
- Release Date
- 2021-11-24
- Peptides
- RNA-directed RNA polymerase: A
Non-structural protein 8: BD
Non-structural protein 7: C
Helicase: EF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
DC
CE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-2-1-2-mer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x 1N7: CHAPSO(Non-covalent)
- 2 x AF3: ALUMINUM FLUORIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, J. et al., Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol. (2022)
- Release Date
- 2021-11-24
- Peptides
- RNA-directed RNA polymerase: A
Non-structural protein 8: BD
Non-structural protein 7: C
Helicase: EF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
DC
CE
EF
F