- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-2-1-2-mer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: D.208, N.209, D.218
- Ligands: ADP.4
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.218
MG.9: 4 residues within 4Å:- Chain E: S.293, E.379
- Ligands: ADP.8, AF3.10
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:S.293
MG.15: 4 residues within 4Å:- Chain F: K.292, S.293
- Ligands: ADP.14, AF3.16
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:S.293
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.4: 13 residues within 4Å:- Chain A: F.35, K.50, N.52, C.53, K.73, H.75, N.79, R.116, N.209, Y.217, D.218, G.220
- Ligands: MG.3
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:N.52, A:N.79, A:D.218, A:G.220
- Salt bridges: A:K.50, A:K.50, A:K.73, A:K.73, A:R.116
- pi-Stacking: A:H.75, A:H.75
ADP.8: 11 residues within 4Å:- Chain E: E.265, P.288, G.289, T.290, G.291, K.292, S.293, H.294, K.324
- Ligands: MG.9, AF3.10
12 PLIP interactions:12 interactions with chain E- Hydrogen bonds: E:E.265, E:G.289, E:T.290, E:G.291, E:K.292, E:S.293, E:S.293, E:S.293, E:H.294
- Salt bridges: E:K.292, E:K.324
- pi-Cation interactions: E:R.446
ADP.14: 11 residues within 4Å:- Chain F: E.265, G.289, T.290, G.291, K.292, S.293, H.294, K.324, R.446
- Ligands: MG.15, AF3.16
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:E.265, F:G.289, F:T.290, F:G.291, F:K.292, F:S.293, F:S.293, F:H.294, F:R.446
- Salt bridges: F:K.292, F:K.324
- 2 x AF3: ALUMINUM FLUORIDE(Non-covalent)
AF3.10: 10 residues within 4Å:- Chain E: P.288, G.289, S.293, E.379, Q.408, R.447, G.542, R.571
- Ligands: ADP.8, MG.9
No protein-ligand interaction detected (PLIP)AF3.16: 9 residues within 4Å:- Chain F: G.286, P.287, P.288, G.289, T.290, K.292, S.293
- Ligands: ADP.14, MG.15
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, J. et al., Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol. (2022)
- Release Date
- 2021-12-01
- Peptides
- RNA-directed RNA polymerase: A
Non-structural protein 8: BD
Non-structural protein 7: C
Helicase: EF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
DC
CE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-2-1-2-mer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x AF3: ALUMINUM FLUORIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, J. et al., Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol. (2022)
- Release Date
- 2021-12-01
- Peptides
- RNA-directed RNA polymerase: A
Non-structural protein 8: BD
Non-structural protein 7: C
Helicase: EF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
DC
CE
EF
F