SMTL ID : 7rec.1

Structure of Thr354Asn, Glu355Gln, Thr412Asn, Ile414Met, Ile464His, and Phe467Met mutant human CaMKII alpha hub bound to 5-HDC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-14-mer

Ligands

12 x 7ZV: 5-hydroxydiclofenac(Non-covalent)

7ZV.1: 13 residues within 4Å: Chain A: I.21, Y.29, E.41, E.43, F.54, H.55, Y.58, F.59, R.93, R.113, M.127, R.129, S.134 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.21, A:Y.29, A:H.55, A:Y.58, A:F.59 Hydrogen bonds: A:Y.29, A:E.41, A:H.55, A:R.129 Salt bridges: A:R.113, A:R.129 pi-Cation interactions: A:R.129 7ZV.2: 11 residues within 4Å: Chain B: I.21, Y.29, E.41, H.55, Y.58, R.93, R.113, M.127, R.129, S.134, V.135 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.21, B:Y.29, B:H.55, B:Y.58 Hydrogen bonds: B:E.41, B:H.55, B:R.129 Salt bridges: B:R.113, B:R.129 pi-Cation interactions: B:R.129 7ZV.3: 12 residues within 4Å: Chain D: I.21, Y.29, E.41, F.54, H.55, Y.58, L.62, R.93, R.113, M.127, R.129, S.134 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:I.21, D:Y.29, D:H.55, D:Y.58, D:L.62 Hydrogen bonds: D:Y.29, D:H.55 Salt bridges: D:R.113, D:R.129 pi-Cation interactions: D:R.129 Halogen bonds: D:R.93 7ZV.4: 12 residues within 4Å: Chain E: I.21, Y.29, E.41, E.43, H.55, Y.58, L.62, R.93, R.113, M.127, R.129, S.134 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:I.21, E:Y.29, E:H.55, E:Y.58, E:L.62 Hydrogen bonds: E:E.41 Salt bridges: E:R.113, E:R.129 pi-Cation interactions: E:R.129 Halogen bonds: E:R.93 7ZV.6: 12 residues within 4Å: Chain F: I.21, Y.29, E.41, F.54, H.55, Y.58, F.59, R.93, E.111, R.113, M.127, R.129 11 PLIP interactions: 11 interactions with chain F Hydrophobic interactions: F:I.21, F:Y.29, F:H.55, F:Y.58, F:Y.58, F:F.59 Hydrogen bonds: F:Y.29, F:E.41 Salt bridges: F:R.113, F:R.129 pi-Cation interactions: F:R.129 7ZV.7: 12 residues within 4Å: Chain G: I.21, Y.29, E.41, F.54, H.55, Y.58, F.59, R.93, R.113, M.127, R.129, S.134 9 PLIP interactions: 9 interactions with chain G Hydrophobic interactions: G:I.21, G:Y.29, G:H.55, G:Y.58 Hydrogen bonds: G:H.55 Salt bridges: G:R.113, G:R.129 pi-Cation interactions: G:R.129 Halogen bonds: G:R.93 7ZV.8: 13 residues within 4Å: Chain H: I.21, Y.29, E.41, E.43, F.54, H.55, Y.58, F.59, R.93, R.113, M.127, R.129, S.134 10 PLIP interactions: 10 interactions with chain H Hydrophobic interactions: H:I.21, H:Y.29, H:H.55, H:Y.58, H:F.59 Hydrogen bonds: H:E.41, H:R.129 Salt bridges: H:R.113, H:R.129 pi-Cation interactions: H:R.129 7ZV.9: 11 residues within 4Å: Chain I: I.21, Y.29, E.41, H.55, Y.58, R.93, R.113, M.127, R.129, S.134, V.135 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:I.21, I:Y.29, I:H.55, I:Y.58 Hydrogen bonds: I:Y.29, I:E.41, I:R.129 Salt bridges: I:R.113, I:R.129 pi-Cation interactions: I:R.129 7ZV.10: 12 residues within 4Å: Chain K: I.21, Y.29, E.41, F.54, H.55, Y.58, L.62, R.93, R.113, M.127, R.129, S.134 9 PLIP interactions: 9 interactions with chain K Hydrophobic interactions: K:I.21, K:Y.29, K:H.55, K:Y.58, K:L.62 Salt bridges: K:R.113, K:R.129 pi-Cation interactions: K:R.129 Halogen bonds: K:R.93 7ZV.11: 12 residues within 4Å: Chain L: I.21, Y.29, E.41, E.43, H.55, Y.58, L.62, R.93, R.113, M.127, R.129, S.134 12 PLIP interactions: 12 interactions with chain L Hydrophobic interactions: L:I.21, L:Y.29, L:H.55, L:Y.58, L:L.62 Hydrogen bonds: L:Y.29, L:E.41, L:H.55 Salt bridges: L:R.113, L:R.129 pi-Cation interactions: L:R.129 Halogen bonds: L:R.93 7ZV.13: 12 residues within 4Å: Chain M: I.21, Y.29, E.41, F.54, H.55, Y.58, F.59, R.93, E.111, R.113, M.127, R.129 11 PLIP interactions: 11 interactions with chain M Hydrophobic interactions: M:I.21, M:Y.29, M:H.55, M:Y.58, M:Y.58, M:F.59 Hydrogen bonds: M:E.41, M:H.55 Salt bridges: M:R.113, M:R.129 pi-Cation interactions: M:R.129 7ZV.14: 12 residues within 4Å: Chain N: I.21, Y.29, E.41, F.54, H.55, Y.58, F.59, R.93, R.113, M.127, R.129, S.134 9 PLIP interactions: 9 interactions with chain N Hydrophobic interactions: N:I.21, N:Y.29, N:H.55, N:Y.58 Hydrogen bonds: N:Y.29 Salt bridges: N:R.113, N:R.129 pi-Cation interactions: N:R.129 Halogen bonds: N:R.93

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain B: P.104, R.105, T.106 Chain E: Y.58 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.104 NA.12: 4 residues within 4Å: Chain I: P.104, R.105, T.106 Chain L: Y.58 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain I Hydrogen bonds: L:Y.58, L:Y.58, I:T.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leurs, U. et al., GHB analogs confer neuroprotection through specific interaction with the CaMKII alpha hub domain. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-07-21

Peptides

Calcium/calmodulin-dependent protein kinase type II subunit alpha: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
D

C
A

D
B

E
C

F
E

G
F

H
G

I
D

J
A

K
B

L
C

M
E

N
F

Calcium/calmodulin-dependent protein kinase type II subunit alpha

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