SMTL ID : 7rei.1

The crystal structure of nickel bound human ADO C18S C239S variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: H.112, H.114, H.193 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.112, A:H.114, A:H.193, H2O.1, H2O.2, H2O.6

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: D.134, K.135, D.137, P.187, H.188, N.191, L.192 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.134, A:K.135, A:K.135, A:H.188 GOL.3: 7 residues within 4Å: Chain A: P.84, T.107, S.108, P.110, A.253, D.255, F.256 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.108, A:D.255 GOL.4: 4 residues within 4Å: Chain A: R.3, R.12, K.53, L.57 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.3, A:R.3, A:R.12, A:K.53 GOL.5: 8 residues within 4Å: Chain A: N.67, I.68, A.69, R.71, M.88, E.261, P.262, P.264 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.67, A:A.69, A:R.71, A:R.71, A:P.262 GOL.6: 6 residues within 4Å: Chain A: R.71, P.83, T.86, K.104, E.259, E.261 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.71, A:K.104 Water bridges: A:R.71, A:E.259, A:E.261 GOL.7: 6 residues within 4Å: Chain A: C.132, S.172, Y.176, C.183, I.184, D.190 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.172, A:S.172, A:I.184 Water bridges: A:I.184 GOL.8: 8 residues within 4Å: Chain A: F.101, I.109, D.206, L.208, Y.212, C.220, Y.222, F.256 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.206, A:Y.222, A:Y.222 Water bridges: A:D.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Crystal structure of human cysteamine dioxygenase provides a structural rationale for its function as an oxygen sensor. J.Biol.Chem. (2021)

Release Date

2021-09-15

Peptides

2-aminoethanethiol dioxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2-aminoethanethiol dioxygenase