SMTL ID : 7rhm.1

Structure of Q67H/N74D mutant of disulfide stabilized HIV-1 CA hexamer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-hexamer

Ligands

24 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: P.17 Ligand excluded by PLIP IOD.3: 5 residues within 4Å: Chain A: G.60, G.61 Chain F: E.35, K.170, R.173 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: R.173, K.182 Chain E: H.67 Ligand excluded by PLIP IOD.10: 4 residues within 4Å: Chain B: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.11: 1 residues within 4Å: Chain B: P.17 Ligand excluded by PLIP IOD.12: 5 residues within 4Å: Chain B: G.60, G.61 Chain D: E.35, K.170, R.173 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain B: R.173, K.182 Chain F: H.67 Ligand excluded by PLIP IOD.19: 4 residues within 4Å: Chain C: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.20: 1 residues within 4Å: Chain C: P.17 Ligand excluded by PLIP IOD.21: 5 residues within 4Å: Chain C: G.60, G.61 Chain E: E.35, K.170, R.173 Ligand excluded by PLIP IOD.22: 3 residues within 4Å: Chain C: R.173, K.182 Chain D: H.67 Ligand excluded by PLIP IOD.28: 4 residues within 4Å: Chain D: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.29: 1 residues within 4Å: Chain D: P.17 Ligand excluded by PLIP IOD.30: 5 residues within 4Å: Chain C: E.35, K.170, R.173 Chain D: G.60, G.61 Ligand excluded by PLIP IOD.31: 3 residues within 4Å: Chain B: H.67 Chain D: R.173, K.182 Ligand excluded by PLIP IOD.37: 4 residues within 4Å: Chain E: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.38: 1 residues within 4Å: Chain E: P.17 Ligand excluded by PLIP IOD.39: 5 residues within 4Å: Chain A: E.35, K.170, R.173 Chain E: G.60, G.61 Ligand excluded by PLIP IOD.40: 3 residues within 4Å: Chain C: H.67 Chain E: R.173, K.182 Ligand excluded by PLIP IOD.46: 4 residues within 4Å: Chain F: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.47: 1 residues within 4Å: Chain F: P.17 Ligand excluded by PLIP IOD.48: 5 residues within 4Å: Chain B: E.35, K.170, R.173 Chain F: G.60, G.61 Ligand excluded by PLIP IOD.49: 3 residues within 4Å: Chain A: H.67 Chain F: R.173, K.182 Ligand excluded by PLIP

30 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: P.17, R.18 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: P.38 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: E.28, G.60, H.62 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: R.162, M.215, Q.219 Chain E: M.144 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: M.96, R.97 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain B: P.17, R.18 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain B: P.38 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: E.28, G.60, H.62 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain B: R.162, M.215, Q.219 Chain F: M.144 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain B: M.96, R.97 Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain C: P.17, R.18 Ligand excluded by PLIP CL.24: 1 residues within 4Å: Chain C: P.38 Ligand excluded by PLIP CL.25: 3 residues within 4Å: Chain C: E.28, G.60, H.62 Ligand excluded by PLIP CL.26: 4 residues within 4Å: Chain C: R.162, M.215, Q.219 Chain D: M.144 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain C: M.96, R.97 Ligand excluded by PLIP CL.32: 2 residues within 4Å: Chain D: P.17, R.18 Ligand excluded by PLIP CL.33: 1 residues within 4Å: Chain D: P.38 Ligand excluded by PLIP CL.34: 3 residues within 4Å: Chain D: E.28, G.60, H.62 Ligand excluded by PLIP CL.35: 4 residues within 4Å: Chain B: M.144 Chain D: R.162, M.215, Q.219 Ligand excluded by PLIP CL.36: 2 residues within 4Å: Chain D: M.96, R.97 Ligand excluded by PLIP CL.41: 2 residues within 4Å: Chain E: P.17, R.18 Ligand excluded by PLIP CL.42: 1 residues within 4Å: Chain E: P.38 Ligand excluded by PLIP CL.43: 3 residues within 4Å: Chain E: E.28, G.60, H.62 Ligand excluded by PLIP CL.44: 4 residues within 4Å: Chain C: M.144 Chain E: R.162, M.215, Q.219 Ligand excluded by PLIP CL.45: 2 residues within 4Å: Chain E: M.96, R.97 Ligand excluded by PLIP CL.50: 2 residues within 4Å: Chain F: P.17, R.18 Ligand excluded by PLIP CL.51: 1 residues within 4Å: Chain F: P.38 Ligand excluded by PLIP CL.52: 3 residues within 4Å: Chain F: E.28, G.60, H.62 Ligand excluded by PLIP CL.53: 4 residues within 4Å: Chain A: M.144 Chain F: R.162, M.215, Q.219 Ligand excluded by PLIP CL.54: 2 residues within 4Å: Chain F: M.96, R.97 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bester, S.M. et al., Structural and Mechanistic Bases of Viral Resistance to HIV-1 Capsid Inhibitor Lenacapavir. Mbio (2022)

Release Date

2022-07-27

Peptides

CAPSID PROTEIN P24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

C
C

D
C

E
C

F
C

CAPSID PROTEIN P24

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