SMTL ID : 7rhr.1

Cryo-EM structure of Xenopus Patched-1 in nanodisc

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: E.811, N.989, Y.990, L.993 No protein-ligand interaction detected (PLIP)

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 11 residues within 4Å: Chain A: V.115, W.119, A.559, L.765, L.767, I.770, Y.791, Y.1002, F.1006, W.1007, F.1136 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.115, A:V.115, A:W.119, A:W.119, A:W.119, A:A.559, A:L.765, A:L.767, A:L.767, A:I.770, A:Y.1002, A:F.1006, A:F.1006, A:W.1007 CLR.3: 10 residues within 4Å: Chain A: V.206, I.210, Y.214, W.246, L.255, L.258, W.268, M.271, I.272, A.275 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.206, A:I.210, A:Y.214, A:W.246, A:L.255, A:L.258, A:I.272, A:A.275 CLR.6: 8 residues within 4Å: Chain A: L.106, A.109, L.111, V.427, V.432, L.475, F.485, T.490 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.106, A:L.106, A:A.109, A:L.111, A:V.427, A:V.432, A:F.485, A:F.485, A:T.490

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: Y.296, A.298, N.302 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.296, A:N.302 NAG.5: 1 residues within 4Å: Chain A: N.339 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, P. et al., Structural basis for catalyzed assembly of the Sonic hedgehog-Patched1 signaling complex. Dev.Cell (2022)

Release Date

2022-03-02

Peptides

Patched-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Patched-1

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