- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x Q5B: (3S)-citryl-Coenzyme A(Non-covalent)
Q5B.2: 26 residues within 4Å:- Chain A: G.309, A.345, N.346, F.347, T.348, R.379, Q.505, F.533, F.572, A.573, S.574, R.576, S.577, I.597, A.598, V.626, N.638
- Chain C: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021
- Ligands: PO4.6, COA.12
28 PLIP interactions:22 interactions with chain A, 6 interactions with chain C- Hydrophobic interactions: A:F.572, A:F.572, A:I.597
- Hydrogen bonds: A:G.309, A:A.310, A:N.346, A:N.346, A:F.347, A:T.348, A:T.348, A:S.574, A:R.576, A:S.577, A:S.577, A:S.577, A:N.638, C:I.970, C:I.970
- Water bridges: A:S.574, A:S.574, A:E.599, A:N.638
- Salt bridges: A:R.379, A:R.576, C:K.964, C:K.1017, C:K.1018, C:K.1018
Q5B.8: 26 residues within 4Å:- Chain B: G.309, A.345, N.346, F.347, T.348, R.379, Q.505, F.533, F.572, A.573, S.574, R.576, S.577, I.597, A.598, V.626, N.638
- Chain D: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021
- Ligands: PO4.11, COA.17
27 PLIP interactions:21 interactions with chain B, 6 interactions with chain D- Hydrophobic interactions: B:F.572, B:F.572, B:I.597
- Hydrogen bonds: B:G.309, B:N.346, B:N.346, B:F.347, B:T.348, B:T.348, B:S.574, B:S.577, B:S.577, B:S.577, B:N.638, D:I.970, D:I.970
- Water bridges: B:S.574, B:S.574, B:I.597, B:T.625, B:N.638
- Salt bridges: B:R.379, B:R.576, D:K.964, D:K.1017, D:K.1018, D:K.1018
Q5B.14: 27 residues within 4Å:- Chain A: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021
- Chain C: G.309, A.345, N.346, F.347, T.348, R.379, Q.505, F.533, F.572, A.573, S.574, R.576, S.577, I.597, A.598, V.626, N.638, G.665
- Ligands: COA.5, PO4.16
26 PLIP interactions:20 interactions with chain C, 6 interactions with chain A- Hydrophobic interactions: C:F.572, C:F.572, C:I.597
- Hydrogen bonds: C:G.309, C:A.310, C:N.346, C:N.346, C:F.347, C:T.348, C:T.348, C:S.574, C:S.577, C:S.577, C:S.577, C:N.638, A:I.970, A:I.970
- Water bridges: C:S.574, C:S.574, C:N.638
- Salt bridges: C:R.379, C:R.576, A:K.964, A:K.1017, A:K.1018, A:K.1018
Q5B.20: 27 residues within 4Å:- Chain B: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021
- Chain D: G.281, G.309, A.345, N.346, F.347, T.348, R.379, Q.505, F.533, F.572, A.573, S.574, R.576, S.577, I.597, A.598, V.626, N.638
- Ligands: COA.10, PO4.22
29 PLIP interactions:23 interactions with chain D, 6 interactions with chain B- Hydrophobic interactions: D:F.572, D:F.572, D:I.597
- Hydrogen bonds: D:G.309, D:A.310, D:N.346, D:N.346, D:F.347, D:T.348, D:T.348, D:S.574, D:R.576, D:S.577, D:S.577, D:S.577, D:N.638, B:I.970, B:I.970
- Water bridges: D:S.574, D:S.574, D:I.597, D:T.625, D:N.638
- Salt bridges: D:R.379, D:R.576, B:K.964, B:K.1017, B:K.1018, B:K.1018
- 4 x FLC: CITRATE ANION(Non-covalent)
FLC.3: 8 residues within 4Å:- Chain A: H.900, V.904, F.935, G.936, R.986, F.1061, R.1065
- Chain B: R.1085
12 PLIP interactions:1 interactions with chain B, 11 interactions with chain A- Salt bridges: B:R.1085, A:H.900, A:H.900, A:R.986, A:R.1065
- Hydrophobic interactions: A:V.904, A:F.935
- Hydrogen bonds: A:G.936, A:R.1065, A:R.1065
- Water bridges: A:R.986, A:R.986
FLC.9: 8 residues within 4Å:- Chain B: H.900, V.904, F.935, G.936, R.986, F.1061, R.1065
- Ligands: COA.10
11 PLIP interactions:10 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:V.904, B:F.935
- Hydrogen bonds: B:G.936, B:R.1065, B:R.1065
- Water bridges: B:A.938, B:R.986
- Salt bridges: B:H.900, B:R.986, B:R.1065, A:R.1085
FLC.15: 8 residues within 4Å:- Chain C: H.900, V.904, F.935, G.936, R.986, F.1061, R.1065
- Chain D: R.1085
11 PLIP interactions:10 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:V.904, C:F.935
- Hydrogen bonds: C:G.936, C:R.1065, C:R.1065
- Water bridges: C:R.986
- Salt bridges: C:H.900, C:H.900, C:R.986, C:R.1065, D:R.1085
FLC.21: 8 residues within 4Å:- Chain C: R.1085
- Chain D: H.900, V.904, F.935, G.936, R.986, F.1061, R.1065
11 PLIP interactions:10 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:V.904, D:F.935
- Hydrogen bonds: D:G.936, D:R.1065, D:R.1065
- Water bridges: D:R.986
- Salt bridges: D:H.900, D:H.900, D:R.986, D:R.1065, C:R.1085
- 2 x UNL: UNKNOWN LIGAND(Non-functional Binders)
- 4 x COA: COENZYME A(Non-covalent)
COA.5: 17 residues within 4Å:- Chain A: A.903, A.938, L.969, I.970, M.971, G.972, I.973, G.974, H.975, R.976, N.1024, A.1026
- Chain B: R.1085, H.1086, P.1087, W.1088
- Ligands: Q5B.14
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:R.1085, B:R.1085, B:W.1088, A:G.972, A:I.973, A:N.1024
- Water bridges: B:D.1089
- pi-Stacking: B:W.1088, B:W.1088, B:W.1088
COA.10: 18 residues within 4Å:- Chain A: R.1085, H.1086, P.1087, W.1088
- Chain B: A.903, A.938, L.969, I.970, M.971, G.972, I.973, G.974, H.975, R.976, N.1024, A.1026
- Ligands: FLC.9, Q5B.20
10 PLIP interactions:7 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:R.1085, A:R.1085, A:W.1088, B:G.972, B:I.973, B:N.1024
- Water bridges: A:D.1089
- pi-Stacking: A:W.1088, A:W.1088, A:W.1088
COA.12: 17 residues within 4Å:- Chain C: A.903, A.938, L.969, I.970, M.971, G.972, I.973, G.974, H.975, R.976, N.1024, A.1026
- Chain D: R.1085, H.1086, P.1087, W.1088
- Ligands: Q5B.2
10 PLIP interactions:7 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:R.1085, D:R.1085, D:W.1088, C:G.972, C:I.973, C:N.1024
- Water bridges: D:D.1089
- pi-Stacking: D:W.1088, D:W.1088, D:W.1088
COA.17: 17 residues within 4Å:- Chain C: R.1085, H.1086, P.1087, W.1088
- Chain D: A.903, A.938, L.969, I.970, M.971, G.972, I.973, G.974, H.975, R.976, N.1024, A.1026
- Ligands: Q5B.8
10 PLIP interactions:3 interactions with chain D, 7 interactions with chain C- Hydrogen bonds: D:G.972, D:I.973, D:N.1024, C:R.1085, C:R.1085, C:W.1088
- Water bridges: C:D.1089
- pi-Stacking: C:W.1088, C:W.1088, C:W.1088
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.6: 8 residues within 4Å:- Chain A: G.281, G.282, G.283, S.308, S.663, G.664, G.665
- Ligands: Q5B.2
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.282, A:G.283, A:S.308, A:S.308, A:G.664, A:G.665
PO4.11: 8 residues within 4Å:- Chain B: G.281, G.282, G.283, S.308, S.663, G.664, G.665
- Ligands: Q5B.8
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.282, B:G.283, B:S.308, B:G.664, B:G.665
PO4.16: 8 residues within 4Å:- Chain C: G.281, G.282, G.283, S.308, S.663, G.664, G.665
- Ligands: Q5B.14
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:G.282, C:G.283, C:S.308, C:G.664, C:G.665
PO4.22: 8 residues within 4Å:- Chain D: G.281, G.282, G.283, S.308, S.663, G.664, G.665
- Ligands: Q5B.20
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:G.282, D:G.283, D:S.308, D:S.308, D:S.663, D:G.664, D:G.665
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wei, X. et al., Allosteric role of the citrate synthase homology domain of ATP citrate lyase. Nat Commun (2023)
- Release Date
- 2023-05-10
- Peptides
- ATP-citrate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x Q5B: (3S)-citryl-Coenzyme A(Non-covalent)
- 4 x FLC: CITRATE ANION(Non-covalent)
- 2 x UNL: UNKNOWN LIGAND(Non-functional Binders)
- 4 x COA: COENZYME A(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wei, X. et al., Allosteric role of the citrate synthase homology domain of ATP citrate lyase. Nat Commun (2023)
- Release Date
- 2023-05-10
- Peptides
- ATP-citrate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D