SMTL ID : 7rj9.2 (1 other biounit)

Crystal structure of the Vitronectin hemopexin-like domain binding Calcium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.10, D.55, D.103, D.157 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.10, A:D.55, A:D.103, H2O.6, H2O.6

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 9 residues within 4Å: Chain A: A.11, F.12, A.56, A.57, A.104, A.105, A.158, A.159 Ligands: NA.3 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: F.12, A.57, A.105, A.159 Ligands: CL.2, SO4.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.57

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 13 residues within 4Å: Chain A: F.12, T.13, D.14, A.57, F.58, T.59, A.105, L.106, A.107, A.159, M.160, A.161 Ligands: NA.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.14, A:T.59, A:A.107, A:A.161, A:A.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aleshin, A.E. et al., Crystal structure of the Vitronectin hemopexin-like domain binding Calcium. To Be Published

Release Date

2022-07-27

Peptides

Vitronectin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Vitronectin

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