SMTL ID : 7rji.1

BthTX-II variant b, from Bothrops jararacussu venom, complexed with stearic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x STE: STEARIC ACID(Non-covalent)

STE.1: 5 residues within 4Å: Chain A: L.2, F.5, F.18, Y.21, T.22 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.5, A:F.18, A:T.22 Water bridges: A:H.47, A:H.47 Salt bridges: A:H.47

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: Y.27, G.29, W.30, G.31, D.48 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.29, A:G.31 Water bridges: A:G.31

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: P.118, A.119 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.119 SO4.4: 4 residues within 4Å: Chain A: G.32, Q.33, G.34, A.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.33, A:G.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borges, R.J. et al., BthTX-II from Bothrops jararacussu venom has variants with different oligomeric assemblies: An example of snake venom phospholipases A 2 versatility. Int.J.Biol.Macromol. (2021)

Release Date

2022-01-05

Peptides

BthTX-IIb: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BthTX-IIb