SMTL ID : 7rkc.1

Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: H.165, T.169, Q.220, M.224, K.227 Chain B: E.50 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.169 Salt bridges: A:H.165, A:K.227 Hydrogen bonds: B:E.50 ACT.2: 4 residues within 4Å: Chain A: D.123, P.124, E.125, K.174 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.123, A:E.125 Salt bridges: A:K.174 ACT.3: 4 residues within 4Å: Chain A: E.84, R.93, G.148, P.150 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.84 Salt bridges: A:R.93 ACT.4: 6 residues within 4Å: Chain A: W.47, E.50 Chain B: H.165, T.169, Q.220, M.224 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:H.165 Hydrophobic interactions: A:E.50 ACT.5: 3 residues within 4Å: Chain A: W.47 Chain B: M.110, H.165 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:H.165 Salt bridges: B:H.165 Hydrogen bonds: A:W.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hicks, D.R. et al., De novo design of protein homodimers containing tunable symmetric protein pockets. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-05-18

Peptides

D_3_633: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D_3_633