SMTL ID : 7rki.1

Griffithsin-S10Y/S42Y/S88Y

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

3 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.1: 7 residues within 4Å: Chain A: Y.89, G.129, D.130, Y.131, D.133 Chain B: G.32, G.33 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:G.33, A:G.129, A:D.130, A:Y.131, A:Y.131 Water bridges: B:G.32 MAN.2: 7 residues within 4Å: Chain A: G.47, S.48, Y.49, D.51, G.64, G.65, Y.131 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.47, A:S.48, A:Y.49, A:Y.49, A:G.65 MAN.3: 8 residues within 4Å: Chain B: S.46, G.47, S.48, Y.49, D.51, G.64, G.65, Y.131 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.47, B:S.48, B:Y.49, B:Y.49, B:D.51, B:G.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, J. et al., C 3 -Symmetric Aromatic Core of Griffithsin Is Essential for Potent Anti-HIV Activity. Acs Chem.Biol. (2022)

Release Date

2022-05-18

Peptides

Griffithsin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Griffithsin