SMTL ID : 7rkr.1

Naegleria fowleri CYP51 (NfCYP51) complex with (S)-1-(4-fluorophenyl)-2-(1H-imidazol-1-yl)ethyl 3-(trifluoromethyl)benzoate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: L.78, Y.82, Y.95, M.104, V.107, A.268, G.269, T.272, T.276, L.327, P.332, L.333, I.336, R.338, P.397, F.398, G.399, H.403, C.405, I.406, G.407, F.410, A.411 Ligands: L49.2 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:V.107, A:A.268, A:L.327, A:P.332, A:L.333, A:F.398, A:I.406, A:F.410, A:A.411 Hydrogen bonds: A:Y.95, A:H.403 Salt bridges: A:R.338, A:H.403 Metal complexes: A:C.405

1 x L49: (1S)-1-(4-fluorophenyl)-2-(1H-imidazol-1-yl)ethyl 3-(trifluoromethyl)benzoate(Non-covalent)

L49.2: 15 residues within 4Å: Chain A: Y.82, F.84, M.85, F.89, V.94, Y.95, V.107, V.110, A.264, G.265, F.267, A.268, T.272, L.333 Ligands: HEM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.94, A:Y.95, A:V.107, A:A.264, A:F.267, A:A.268 pi-Stacking: A:Y.82

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: L.18, S.24, V.26, S.27 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.27 CA.4: 3 residues within 4Å: Chain A: L.59, N.60, S.360 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, V. et al., Miconazole-like Scaffold is a Promising Lead for Naegleria fowleri -Specific CYP51 Inhibitors. J.Med.Chem. (2023)

Release Date

2022-07-27

Peptides

Protein CYP51: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein CYP51

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