SMTL ID : 7rlu.1

Structure of ALDH1L1 (10-formyltetrahydrofolate dehydrogenase) in complex with NADP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 17 residues within 4Å: Chain A: V.570, I.571, W.573, K.597, A.599, Q.600, G.628, S.629, G.630, G.634, Q.635, F.648, G.650, S.651, V.654, H.657, I.658 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:I.571, A:W.573, A:Q.600, A:G.630, A:Q.635, A:S.651, A:S.651, A:S.651 Salt bridges: A:K.597 NAP.4: 16 residues within 4Å: Chain B: V.570, I.571, W.573, K.597, A.599, Q.600, G.628, S.629, G.630, G.634, Q.635, F.648, G.650, S.651, V.654, H.657 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:I.571, B:K.597, B:Q.600, B:G.630, B:Q.635, B:S.651, B:S.651 Salt bridges: B:K.597 NAP.7: 16 residues within 4Å: Chain C: V.570, I.571, W.573, K.597, A.599, Q.600, G.628, S.629, G.630, G.634, Q.635, F.648, G.650, S.651, V.654, H.657 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:I.571, C:K.597, C:Q.600, C:G.630, C:Q.635, C:S.651, C:S.651 Salt bridges: C:K.597 NAP.8: 17 residues within 4Å: Chain D: V.570, I.571, W.573, K.597, A.599, Q.600, G.628, S.629, G.630, G.634, Q.635, F.648, G.650, S.651, V.654, H.657, I.658 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:I.571, D:W.573, D:K.597, D:Q.600, D:G.630, D:Q.635, D:S.651, D:S.651, D:S.651 Salt bridges: D:K.597

4 x PNS: 4'-PHOSPHOPANTETHEINE(Covalent)

PNS.2: 15 residues within 4Å: Chain A: K.520, T.521, M.525, Y.575, M.578, W.582, F.701, N.706, C.707, N.864, K.865, T.866 Chain B: A.550 Chain D: S.354, V.355 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:K.520, A:F.701, D:V.355 Hydrogen bonds: A:N.706, A:T.866 Salt bridges: A:K.520, A:K.865 PNS.3: 16 residues within 4Å: Chain A: S.354, V.355 Chain C: A.550 Chain D: K.520, T.521, M.525, Y.575, M.578, W.582, F.701, N.706, C.707, I.708, N.864, K.865, T.866 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:K.520, D:F.701, A:V.355 Hydrogen bonds: D:N.706, D:T.866 Salt bridges: D:K.520, D:K.865 PNS.5: 16 residues within 4Å: Chain A: A.550 Chain B: K.520, T.521, M.525, Y.575, M.578, M.579, W.582, F.701, N.706, C.707, N.864, K.865, T.866 Chain C: S.354, V.355 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:K.520, B:F.701, C:V.355 Hydrogen bonds: B:N.706, B:T.866 Salt bridges: B:K.520, B:K.865 PNS.6: 16 residues within 4Å: Chain B: S.354, V.355 Chain C: K.520, T.521, M.525, Y.575, M.578, W.582, F.701, N.706, C.707, I.708, N.864, K.865, T.866 Chain D: A.550 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:F.701, C:T.866, B:V.355 Hydrogen bonds: C:N.706, C:N.864, C:T.866 Salt bridges: C:K.520, C:K.865

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsybovsky, Y. et al., Structure of putative tumor suppressor ALDH1L1. Commun Biol (2022)

Release Date

2022-01-12

Peptides

Cytosolic 10-formyltetrahydrofolate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

Cytosolic 10-formyltetrahydrofolate dehydrogenase