SMTL ID : 7rmm.1 (1 other biounit)

Structure of N74D mutant of disulfide stabilized HIV-1 CA hexamer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-hexamer

Ligands

12 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: G.60, G.61, Q.63 Chain F: R.173 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: R.18 Chain D: P.17 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain B: G.61, Q.63 Chain E: R.173 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain B: R.18 Chain C: P.17 Ligand excluded by PLIP IOD.17: 4 residues within 4Å: Chain B: R.173 Chain C: G.60, G.61, Q.63 Ligand excluded by PLIP IOD.18: 2 residues within 4Å: Chain C: R.18 Chain F: P.17 Ligand excluded by PLIP IOD.25: 3 residues within 4Å: Chain A: R.173 Chain D: G.61, Q.63 Ligand excluded by PLIP IOD.26: 2 residues within 4Å: Chain D: R.18 Chain E: P.17 Ligand excluded by PLIP IOD.33: 4 residues within 4Å: Chain D: R.173 Chain E: G.60, G.61, Q.63 Ligand excluded by PLIP IOD.34: 2 residues within 4Å: Chain B: P.17 Chain E: R.18 Ligand excluded by PLIP IOD.41: 3 residues within 4Å: Chain C: R.173 Chain F: G.61, Q.63 Ligand excluded by PLIP IOD.42: 2 residues within 4Å: Chain A: P.17 Chain F: R.18 Ligand excluded by PLIP

36 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: Q.50 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.162, M.215, Q.219 Chain D: M.144 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: P.17, R.18 Chain F: R.18 Ligand excluded by PLIP CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: N.57 Chain F: P.38, R.173 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: I.37, P.38 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: Q.50 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain B: R.162, Q.219 Chain C: M.144 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain B: P.125 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: N.57 Chain E: P.38, R.173 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain B: P.17, R.18 Chain E: R.18 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain B: I.37, P.38 Ligand excluded by PLIP CL.19: 1 residues within 4Å: Chain C: Q.50 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain C: R.162, M.215, Q.219 Chain F: M.144 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain B: R.18 Chain C: P.17, R.18 Ligand excluded by PLIP CL.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain B: P.38, R.173 Chain C: N.57 Ligand excluded by PLIP CL.24: 2 residues within 4Å: Chain C: I.37, P.38 Ligand excluded by PLIP CL.27: 1 residues within 4Å: Chain D: Q.50 Ligand excluded by PLIP CL.28: 3 residues within 4Å: Chain D: R.162, Q.219 Chain E: M.144 Ligand excluded by PLIP CL.29: 1 residues within 4Å: Chain D: P.125 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain A: P.38, R.173 Chain D: N.57 Ligand excluded by PLIP CL.31: 3 residues within 4Å: Chain A: R.18 Chain D: P.17, R.18 Ligand excluded by PLIP CL.32: 2 residues within 4Å: Chain D: I.37, P.38 Ligand excluded by PLIP CL.35: 1 residues within 4Å: Chain E: Q.50 Ligand excluded by PLIP CL.36: 4 residues within 4Å: Chain B: M.144 Chain E: R.162, M.215, Q.219 Ligand excluded by PLIP CL.37: 3 residues within 4Å: Chain D: R.18 Chain E: P.17, R.18 Ligand excluded by PLIP CL.38: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.39: 3 residues within 4Å: Chain D: P.38, R.173 Chain E: N.57 Ligand excluded by PLIP CL.40: 2 residues within 4Å: Chain E: I.37, P.38 Ligand excluded by PLIP CL.43: 1 residues within 4Å: Chain F: Q.50 Ligand excluded by PLIP CL.44: 3 residues within 4Å: Chain A: M.144 Chain F: R.162, Q.219 Ligand excluded by PLIP CL.45: 1 residues within 4Å: Chain F: P.125 Ligand excluded by PLIP CL.46: 3 residues within 4Å: Chain C: P.38, R.173 Chain F: N.57 Ligand excluded by PLIP CL.47: 3 residues within 4Å: Chain C: R.18 Chain F: P.17, R.18 Ligand excluded by PLIP CL.48: 2 residues within 4Å: Chain F: I.37, P.38 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bester, S.M. et al., Structural and Mechanistic Bases of Viral Resistance to HIV-1 Capsid Inhibitor Lenacapavir. Mbio (2022)

Release Date

2022-08-03

Peptides

CAPSID PROTEIN P24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

CAPSID PROTEIN P24

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