SMTL ID : 7rnj.1

S2P6 Fab fragment bound to the SARS-CoV/SARS-CoV-2 spike stem helix peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.67 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.60, D.61, R.62, R.78 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.62 Water bridges: A:D.61, A:D.61 Salt bridges: A:R.78 SO4.2: 3 residues within 4Å: Chain A: Y.50, T.57 Chain B: K.102 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.50, A:Y.50, A:T.57 Salt bridges: B:K.102 SO4.3: 3 residues within 4Å: Chain B: N.52, S.54, H.57 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.52, B:S.54 Water bridges: B:S.54 Salt bridges: B:H.57 SO4.4: 2 residues within 4Å: Chain B: R.87, S.88 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.88 Salt bridges: B:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinto, D. et al., Broad betacoronavirus neutralization by a stem helix-specific human antibody. Science (2021)

Release Date

2021-08-11

Peptides

Monoclonal antibody S2P6 Fab light chain: A
Monoclonal antibody S2P6 Fab heavy chain: B
Spike glycoprotein stem helix peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
B

Monoclonal antibody S2P6 Fab light chain

Monoclonal antibody S2P6 Fab heavy chain

Spike glycoprotein stem helix peptide