SMTL ID : 7rnv.1

SH2 domain of guanine nucleotide exchange factor Vav2 in complex with an actin peptide with phosphorylated tyrosine 53

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x SER- PTR- VAL- GLY- ASP: Actin, alpha skeletal muscle(Non-covalent)

SER-PTR-VAL-GLY-ASP.1: 11 residues within 4Å: Chain A: R.21, R.39, R.41, P.42, A.49, K.59, H.60, I.61, K.62, F.97, Q.99 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:A.49, A:K.59, A:H.60, A:I.61, A:K.62, A:F.97 Hydrogen bonds: A:R.21, A:R.21, A:H.60 Water bridges: A:R.41, A:R.41, A:K.62 Salt bridges: A:R.21, A:R.39, A:R.41, A:K.62 pi-Cation interactions: A:R.21

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Y.12, W.14, E.86, Q.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.14, A:Q.89 EDO.3: 2 residues within 4Å: Chain A: L.82, E.86 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amelie, A. et al., The Functional Analysis of a Major Tyrosine Phosphorylation Site on Actin. To Be Published

Release Date

2021-08-11

Peptides

Guanine nucleotide exchange factor VAV2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Guanine nucleotide exchange factor VAV2