SMTL ID : 7rom.1

Crystal structure of Saccharomyces cerevisiae NADH-cytochrome b5 reductase 1 (Cbr1) fragment (residues 28-284) bound to FAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 18 residues within 4Å: Chain A: H.53, R.67, S.68, Y.69, T.70, L.85, V.86, K.87, Y.89, T.91, G.92, N.93, V.94, S.95, T.133, A.136, P.137, F.261 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:P.137 Hydrogen bonds: A:S.68, A:S.68, A:T.70, A:L.85, A:K.87, A:T.91, A:N.93, A:N.93, A:V.94, A:S.95 Water bridges: A:R.67, A:Y.89, A:Y.89, A:T.91, A:T.91, A:T.133, A:T.133, A:T.133, A:T.133 Salt bridges: A:R.67, A:R.67 pi-Stacking: A:Y.69, A:Y.89, A:Y.89

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: H.53, V.55, S.68, R.113 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: R.246, D.256, Q.257 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: N.15, K.110, R.113 Ligand excluded by PLIP

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 8 residues within 4Å: Chain A: A.58, N.59, I.60, G.92, N.93, K.96, M.97, E.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.59, A:G.92, A:M.97 Water bridges: A:Q.108 PGE.6: 1 residues within 4Å: Chain A: R.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.195, A:R.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenwick, M.K. et al., Crystal structure of Saccharomyces cerevisiae NADH-cytochrome b5 reductase 1 (Cbr1) fragment (residues 28-284) bound to FAD. To Be Published

Release Date

2022-08-10

Peptides

NADH-cytochrome b5 reductase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NADH-cytochrome b5 reductase 1