SMTL ID : 7rpx.1

Archaeal DNA ligase and heterotrimeric PCNA in complex with end-joined DNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain D: C.21, G.22 Chain F: D.72, E.78 No protein-ligand interaction detected (PLIP) MN.2: 5 residues within 4Å: Chain D: G.20 Chain F: L.79, G.80, I.81, G.82 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:G.80, F:I.81 MN.3: 4 residues within 4Å: Chain D: C.21 Chain F: V.186, E.187, G.188 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:E.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sverzhinsky, A. et al., Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure (2022)

Release Date

2021-11-17

Peptides

DNA polymerase sliding clamp 1: A
DNA polymerase sliding clamp 2: B
DNA polymerase sliding clamp 3: C
DNA ligase: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

F
E

DNA polymerase sliding clamp 1

DNA polymerase sliding clamp 2

DNA polymerase sliding clamp 3

DNA ligase

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