SMTL ID : 7rqq.1

Structure of chimeric antibody F10heavy_L9light with PfCSP peptide NANPNVDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- ASN- PRO- ASN- VAL- ASP: PfCSP peptide NANPNVDP(Non-covalent)

ALA-ASN-PRO-ASN-VAL-ASP.1: 12 residues within 4Å: Chain A: Y.32, W.52, Y.100, Y.101, D.102, S.103 Chain B: W.32, Y.91, T.92, S.93, Y.94, R.96 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:W.52, B:W.32, B:Y.94 Hydrogen bonds: A:Y.101, A:Y.101, B:W.32, B:S.93, B:R.96, B:R.96

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.58, Y.60, T.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.60 Water bridges: A:R.58 Salt bridges: A:R.58

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain A: S.122 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.122 EDO.4: 4 residues within 4Å: Chain A: S.7, G.8, G.9, T.114 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.8 EDO.5: 2 residues within 4Å: Chain B: T.109, V.110 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L.T. et al., The light chain of the L9 antibody is critical for binding circumsporozoite protein minor repeats and preventing malaria. Cell Rep (2022)

Release Date

2022-03-02

Peptides

F10 Heavy Chain: A
L9 Kappa Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

F10 Heavy Chain

L9 Kappa Chain

Related Entries With Identical Sequence