SMTL ID : 7rr6.1

Multidrug efflux pump subunit AcrB

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

27 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)(Non-functional Binders)

PTY.1: 11 residues within 4Å: Chain A: M.1, F.4, F.5, R.8, I.15 Ligands: PTY.2, PTY.3, PTY.6, PTY.15, PTY.20, PTY.27 Ligand excluded by PLIP PTY.2: 13 residues within 4Å: Chain A: F.4, R.8, F.11 Chain B: Q.439, G.440, V.443, M.447, A.890, E.893 Ligands: PTY.1, PTY.6, PTY.20, D12.22 Ligand excluded by PLIP PTY.3: 10 residues within 4Å: Chain A: M.1, P.2, N.3, Q.439, V.443, L.486 Ligands: PTY.1, PTY.8, PTY.26, PTY.27 Ligand excluded by PLIP PTY.4: 9 residues within 4Å: Chain A: M.447, S.450, A.451, V.454, F.458, I.879, V.883 Chain C: K.29 Ligands: PTY.29 Ligand excluded by PLIP PTY.5: 3 residues within 4Å: Chain A: V.382, F.386, A.479 Ligand excluded by PLIP PTY.6: 5 residues within 4Å: Ligands: PTY.1, PTY.2, PTY.15, PTY.20, PTY.27 Ligand excluded by PLIP PTY.7: 7 residues within 4Å: Chain A: A.385, F.386, F.388, R.468 Ligands: PTY.18, PTY.29, PTY.30 Ligand excluded by PLIP PTY.8: 4 residues within 4Å: Chain A: S.450, V.475, A.479 Ligands: PTY.3 Ligand excluded by PLIP PTY.9: 2 residues within 4Å: Ligands: PTY.18, PTY.34 Ligand excluded by PLIP PTY.14: 12 residues within 4Å: Chain B: F.4, R.8, F.11, V.14, I.15, I.18 Chain C: G.444, M.447, C.887, A.890, L.891 Ligands: PTY.19 Ligand excluded by PLIP PTY.15: 6 residues within 4Å: Ligands: PTY.1, PTY.6, PTY.19, PTY.20, PTY.21, PTY.27 Ligand excluded by PLIP PTY.16: 12 residues within 4Å: Chain A: I.18, L.25 Chain B: V.454, P.455, F.458, F.459, G.460, Q.872, V.883, C.887 Ligands: D12.11, D12.12 Ligand excluded by PLIP PTY.17: 16 residues within 4Å: Chain B: V.382, F.386, F.388, S.450, V.454, A.457, F.458, R.468, S.471, I.472, V.475, S.476, A.479, V.482 Ligands: PTY.18, PTY.28 Ligand excluded by PLIP PTY.18: 6 residues within 4Å: Chain B: A.385, F.386, F.458 Ligands: PTY.7, PTY.9, PTY.17 Ligand excluded by PLIP PTY.19: 12 residues within 4Å: Chain B: M.1, N.3, F.4, F.5, F.11, I.15, I.19, L.480, I.487 Ligands: PTY.14, PTY.15, PTY.21 Ligand excluded by PLIP PTY.20: 6 residues within 4Å: Ligands: PTY.1, PTY.2, PTY.6, PTY.15, PTY.21, D12.22 Ligand excluded by PLIP PTY.21: 5 residues within 4Å: Chain B: M.1 Ligands: PTY.15, PTY.19, PTY.20, D12.22 Ligand excluded by PLIP PTY.26: 13 residues within 4Å: Chain A: G.440, V.443, G.444, M.447, C.887, A.890, L.891 Chain C: F.4, R.8, F.11, I.15 Ligands: PTY.3, PTY.27 Ligand excluded by PLIP PTY.27: 9 residues within 4Å: Chain C: M.1, F.4, F.5, F.11 Ligands: PTY.1, PTY.3, PTY.6, PTY.15, PTY.26 Ligand excluded by PLIP PTY.28: 11 residues within 4Å: Chain B: L.25, A.26, A.381, V.382, A.384, A.385, F.386 Chain C: P.455, F.458, V.883 Ligands: PTY.17 Ligand excluded by PLIP PTY.29: 9 residues within 4Å: Chain A: F.458 Chain C: A.22, L.25, K.29, A.384, A.385 Ligands: PTY.4, PTY.7, PTY.30 Ligand excluded by PLIP PTY.30: 4 residues within 4Å: Chain C: A.385 Ligands: PTY.7, PTY.29, PTY.34 Ligand excluded by PLIP PTY.31: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PTY.32: 1 residues within 4Å: Ligands: PTY.35 Ligand excluded by PLIP PTY.33: 6 residues within 4Å: Chain C: I.472, V.475, S.476, L.480, L.483 Ligands: PTY.34 Ligand excluded by PLIP PTY.34: 5 residues within 4Å: Chain C: A.385, F.386 Ligands: PTY.9, PTY.30, PTY.33 Ligand excluded by PLIP PTY.35: 7 residues within 4Å: Chain C: A.446, M.447, S.450, V.475, A.479, L.483 Ligands: PTY.32 Ligand excluded by PLIP

8 x D12: DODECANE(Non-covalent)(Non-functional Binders)

D12.10: 4 residues within 4Å: Chain A: I.337, V.341, L.376, F.380 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.337, A:V.341, A:L.376, A:F.380 D12.11: 5 residues within 4Å: Chain A: I.18, A.22 Ligands: D12.12, D12.13, PTY.16 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.18, A:A.22 D12.12: 4 residues within 4Å: Chain A: A.381, A.385 Ligands: D12.11, PTY.16 No protein-ligand interaction detected (PLIP) D12.13: 1 residues within 4Å: Ligands: D12.11 No protein-ligand interaction detected (PLIP) D12.22: 9 residues within 4Å: Chain B: M.1, P.2, Q.439, A.479, V.482, L.486 Ligands: PTY.2, PTY.20, PTY.21 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:M.1, B:A.479, B:L.486 D12.23: 5 residues within 4Å: Chain A: P.9, I.10, W.13, T.495 Chain B: W.895 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.9, A:I.10, A:T.495 D12.24: 2 residues within 4Å: Chain B: I.882, W.895 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.882, B:W.895, B:W.895 D12.25: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trinh, T.K.H. et al., pH-tunable membrane-active polymers, NCMNP2a- x , and their potential membrane protein applications. Chem Sci (2023)

Release Date

2022-08-17

Peptides

Multidrug efflux pump subunit AcrB: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

Membrane

We predict this structure to be a membrane protein.
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Multidrug efflux pump subunit AcrB

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