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SMTL ID : 7rso.1

AMC016 SOSIP.v4.2 in complex with PGV04 Fab

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-mer
Ligands
24 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
45 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Schorcht, A. et al., The Glycan Hole Area of HIV-1 Envelope Trimers Contributes Prominently to the Induction of Autologous Neutralization. J.Virol. (2022)
Release Date
2021-09-15
Peptides
AMC016 gp120: AEG
AMC016 gp41: BFH
PGV04 Fab heavy chain: CIK
PGV04 kappa chain: DJL
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
E
C
G
D
B
B
F
E
H
F
C
H
I
G
K
I
D
L
J
J
L
K

AMC016 gp120

Toggle Identical (AEG)

AMC016 gp41

Toggle Identical (BFH)

PGV04 Fab heavy chain

Toggle Identical (CIK)

PGV04 kappa chain

Toggle Identical (DJL)

Related Entries With Identical Sequence

3j5m.1 | 3se9.1 | 4i3r.1 | 4i3s.1 | 6crq.1 | 6vo3.1 | 7rsn.1