SMTL ID : 7rsp.2 (1 other biounit)

Structure of the VPS34 kinase domain with compound 14

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: A.424, L.427, D.428, L.479 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.428, A:D.428 GOL.2: 5 residues within 4Å: Chain A: L.349, K.369, D.372, D.494 Ligands: 7IK.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.369, A:K.369, A:D.372

1 x 7IK: (7R,8R)-2-[(3R)-3-methylmorpholin-4-yl]-7-(propan-2-yl)-6,7-dihydropyrazolo[1,5-a]pyrazin-4(5H)-one(Non-covalent)

7IK.3: 13 residues within 4Å: Chain A: F.345, I.367, K.369, Y.403, M.415, Q.416, F.417, I.418, S.420, L.483, I.493, D.494 Ligands: GOL.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.345, A:I.367, A:M.415, A:I.493 Hydrogen bonds: A:K.369, A:I.418, A:D.494, A:D.494

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, D.X. et al., Structure-Based Design of Potent, Selective, and Orally Bioavailable VPS34 Kinase Inhibitors. J.Med.Chem. (2022)

Release Date

2021-11-24

Peptides

Phosphatidylinositol 3-kinase catalytic subunit type 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Phosphatidylinositol 3-kinase catalytic subunit type 3

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