- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)
- 32 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)
PGW.2: 6 residues within 4Å:- Chain A: L.51, L.164, H.168, A.185, Y.189
- Ligands: PGW.4
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.51, A:H.168
PGW.3: 4 residues within 4Å:- Chain A: P.184, A.185, G.186
- Ligands: PGW.10
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.184
PGW.4: 4 residues within 4Å:- Chain A: Y.44, L.58, L.62
- Ligands: PGW.2
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.44, A:Y.44, A:L.58, A:L.62
PGW.5: 8 residues within 4Å:- Chain A: L.156, V.160, I.163, L.240
- Chain B: L.224, A.227, A.228, L.232
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:L.156, A:L.240, A:L.240, B:L.224, B:L.232
PGW.6: 6 residues within 4Å:- Chain A: L.53, S.121, L.125, G.169, G.173, S.176
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.53, A:L.125
- Hydrogen bonds: A:S.121
PGW.7: 4 residues within 4Å:- Chain A: T.214, Y.218, V.221, L.225
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Y.218, A:L.225
PGW.8: 10 residues within 4Å:- Chain A: P.213, T.214, V.217, V.221, L.224
- Chain D: G.186, L.190, F.193
- Ligands: PGW.9, PGW.32
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:V.217, A:V.221, A:L.224, D:L.190, D:F.193
- Hydrogen bonds: A:T.214
PGW.9: 1 residues within 4Å:- Ligands: PGW.8
No protein-ligand interaction detected (PLIP)PGW.10: 10 residues within 4Å:- Chain A: G.186, L.190, F.193
- Chain B: P.213, T.214, V.217, V.221, L.224
- Ligands: PGW.3, PGW.11
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:L.190, A:F.193, B:V.217, B:V.221, B:L.224
- Hydrogen bonds: B:T.214
PGW.11: 1 residues within 4Å:- Ligands: PGW.10
No protein-ligand interaction detected (PLIP)PGW.13: 6 residues within 4Å:- Chain B: L.51, L.164, H.168, A.185, Y.189
- Ligands: PGW.15
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.51, B:H.168
PGW.14: 4 residues within 4Å:- Chain B: P.184, A.185, G.186
- Ligands: PGW.19
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:P.184
PGW.15: 4 residues within 4Å:- Chain B: Y.44, L.58, L.62
- Ligands: PGW.13
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.44, B:Y.44, B:L.58, B:L.62
PGW.16: 8 residues within 4Å:- Chain B: L.156, V.160, I.163, L.240
- Chain C: L.224, A.227, A.228, L.232
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain B- Hydrophobic interactions: C:L.224, C:L.232, B:L.156, B:L.240, B:L.240
PGW.17: 6 residues within 4Å:- Chain B: L.53, S.121, L.125, G.169, G.173, S.176
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.53, B:L.125
- Hydrogen bonds: B:S.121
PGW.18: 4 residues within 4Å:- Chain B: T.214, Y.218, V.221, L.225
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:Y.218, B:L.225
PGW.19: 10 residues within 4Å:- Chain B: G.186, L.190, F.193
- Chain C: P.213, T.214, V.217, V.221, L.224
- Ligands: PGW.14, PGW.20
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain C- Hydrophobic interactions: B:L.190, B:F.193, C:V.217, C:V.221, C:L.224
- Hydrogen bonds: C:T.214
PGW.20: 1 residues within 4Å:- Ligands: PGW.19
No protein-ligand interaction detected (PLIP)PGW.22: 6 residues within 4Å:- Chain C: L.51, L.164, H.168, A.185, Y.189
- Ligands: PGW.24
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.51, C:H.168
PGW.23: 4 residues within 4Å:- Chain C: P.184, A.185, G.186
- Ligands: PGW.28
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:P.184
PGW.24: 4 residues within 4Å:- Chain C: Y.44, L.58, L.62
- Ligands: PGW.22
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:Y.44, C:Y.44, C:L.58, C:L.62
PGW.25: 8 residues within 4Å:- Chain C: L.156, V.160, I.163, L.240
- Chain D: L.224, A.227, A.228, L.232
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:L.156, C:L.240, C:L.240, D:L.224, D:L.232
PGW.26: 6 residues within 4Å:- Chain C: L.53, S.121, L.125, G.169, G.173, S.176
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:L.53, C:L.125
- Hydrogen bonds: C:S.121
PGW.27: 4 residues within 4Å:- Chain C: T.214, Y.218, V.221, L.225
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:Y.218, C:L.225
PGW.28: 10 residues within 4Å:- Chain C: G.186, L.190, F.193
- Chain D: P.213, T.214, V.217, V.221, L.224
- Ligands: PGW.23, PGW.29
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:V.217, D:V.221, D:L.224, C:L.190, C:F.193
- Hydrogen bonds: D:T.214
PGW.29: 1 residues within 4Å:- Ligands: PGW.28
No protein-ligand interaction detected (PLIP)PGW.31: 6 residues within 4Å:- Chain D: L.51, L.164, H.168, A.185, Y.189
- Ligands: PGW.33
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:L.51, D:H.168, D:A.185
PGW.32: 4 residues within 4Å:- Chain D: P.184, A.185, G.186
- Ligands: PGW.8
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:P.184
PGW.33: 4 residues within 4Å:- Chain D: Y.44, L.58, L.62
- Ligands: PGW.31
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:Y.44, D:Y.44, D:L.58, D:L.62
PGW.34: 8 residues within 4Å:- Chain A: L.224, A.227, A.228, L.232
- Chain D: L.156, V.160, I.163, L.240
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:L.156, D:L.240, D:L.240, A:L.224, A:L.232
PGW.35: 6 residues within 4Å:- Chain D: L.53, S.121, L.125, G.169, G.173, S.176
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:L.53, D:L.125
- Hydrogen bonds: D:S.121
PGW.36: 4 residues within 4Å:- Chain D: T.214, Y.218, V.221, L.225
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:Y.218, D:L.225
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, X. et al., Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel. Nat Commun (2022)
- Release Date
- 2022-11-23
- Peptides
- SthK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)
- 32 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, X. et al., Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel. Nat Commun (2022)
- Release Date
- 2022-11-23
- Peptides
- SthK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.