SMTL ID : 7ruc.1

Metazoan pre-targeting GET complex with SGTA (cBUGGS)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-1-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 19 residues within 4Å: Chain A: G.42, G.43, V.44, G.45, K.46, T.47, T.48, D.162, N.274, Q.275, P.315, L.316, L.317, F.330 Chain B: K.41, G.42, E.247, L.249 Ligands: MG.2 17 PLIP interactions: 13 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:G.43, A:V.44, A:G.45, A:K.46, A:T.47, A:T.47, A:T.48, A:N.274, A:Q.275, A:P.315, A:L.317, B:G.42 Salt bridges: A:K.46, A:K.46, B:K.41, B:K.41, B:K.41 ATP.4: 19 residues within 4Å: Chain A: K.41, G.42, E.247, L.249 Chain B: G.42, G.43, V.44, G.45, K.46, T.47, T.48, N.70, A.164, N.274, P.315, L.316, L.317, F.330 Ligands: MG.5 16 PLIP interactions: 12 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:G.43, B:G.45, B:K.46, B:T.47, B:T.48, B:N.70, B:A.164, B:N.274, B:P.315, B:L.317, A:G.42 Salt bridges: B:K.46, B:K.46, A:K.41, A:K.41, A:K.41

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: K.46, T.47, D.162 Chain B: K.41 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.47 MG.5: 5 residues within 4Å: Chain B: T.47, N.70, N.74, D.162 Ligands: ATP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.47

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: C.285, M.287, C.288 Chain B: C.285, M.287, C.288 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.285, B:C.288, A:C.285, A:C.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keszei, A.F.A. et al., Structural insights into metazoan pretargeting GET complexes. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-12-15

Peptides

ATPase GET3: AB
Golgi to ER traffic protein 4 homolog: CE
Large proline-rich protein BAG6: DF
Ubiquitin-like protein 4A: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

E
F

D
D

F
G

G
H

ATPase GET3

Golgi to ER traffic protein 4 homolog

Large proline-rich protein BAG6

Ubiquitin-like protein 4A

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