7rvo.1 | SWISS-MODEL Template Library

SMTL ID : 7rvo.1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 7VI: N-[(benzyloxy)carbonyl]-L-valyl-3-cyclopropyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide(Covalent)

7VI.1:	19 residues within 4Å: Chain A: H.41, M.49, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, Q.189, T.190, A.191, Q.192 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:H.41, A:M.165, A:P.168, A:D.187 Hydrogen bonds: A:F.140, A:N.142, A:G.143, A:C.145, A:H.164, A:E.166, A:E.166, A:Q.189
7VI.2:	18 residues within 4Å: Chain B: H.41, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, Q.189, T.190, A.191, Q.192 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:H.41, B:M.165, B:P.168, B:D.187 Hydrogen bonds: B:G.143, B:S.144, B:C.145, B:H.164, B:E.166, B:E.166, B:E.166, B:Q.189 Water bridges: B:Q.189, B:Q.189

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ma, Y. et al., A multi-pronged evaluation of aldehyde-based tripeptidyl main protease inhibitors as SARS-CoV-2 antivirals. Eur.J.Med.Chem. (2022)

Release Date

2022-07-20

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B