SMTL ID : 7rw4.1

Crystal structure of junctophilin-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 1 residues within 4Å: Chain A: R.108 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.108 ACT.4: 5 residues within 4Å: Chain A: Y.126, R.141, R.147, I.158, T.164 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.126, A:I.158 Water bridges: A:R.141, A:T.164, A:T.164 Salt bridges: A:R.141, A:R.147

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: W.83, R.100, Y.109, Q.118, E.124 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.100, A:Y.109 Water bridges: A:Q.118, A:E.124, A:E.124 GOL.3: 4 residues within 4Å: Chain A: Y.152, V.173, D.174, A.175 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.173, A:A.175 GOL.5: 3 residues within 4Å: Chain A: Y.55, W.57, W.67 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.50, A:E.50, A:Y.55, A:G.70, A:R.72 GOL.6: 7 residues within 4Å: Chain A: F.11, Y.17, K.25, A.26, C.32, W.45, G.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.26, A:G.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Z.F. et al., Structures of the junctophilin/voltage-gated calcium channel interface reveal hot spot for cardiomyopathy mutations. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-02-23

Peptides

Junctophilin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Junctophilin-1