SMTL ID : 7rwf.1

Crystal structure of CDK2 in complex with TW8672

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: C.178, K.179, Y.181 1 PLIP interactions: 1 interactions with chain A Water bridges: A:C.178

1 x 7TW: 2-{[2-(1H-indol-3-yl)ethyl]amino}-5-nitrobenzoic acid(Non-covalent)

7TW.2: 16 residues within 4Å: Chain A: K.34, I.36, I.53, L.56, L.59, I.64, V.65, L.79, F.81, C.119, V.124, D.146, F.147, L.149, A.150, V.155 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.56, A:L.59, A:I.64, A:L.79, A:F.81, A:V.124, A:F.147, A:F.147, A:L.149, A:L.149 Hydrogen bonds: A:L.59, A:D.146, A:F.147 Water bridges: A:K.34, A:L.67, A:D.146, A:D.146 Salt bridges: A:K.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faber, E.B. et al., Development of allosteric and selective CDK2 inhibitors for contraception with negative cooperativity to cyclin binding. Nat Commun (2023)

Release Date

2022-08-24

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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