- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)
- 28 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)
PGW.2: 9 residues within 4Å:- Chain A: G.186, T.187, Y.189, L.190, F.193
- Chain B: P.213, T.214, V.217
- Ligands: PGW.4
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:Y.189, A:L.190, A:L.190, A:F.193, A:F.193, B:V.217, B:V.217
PGW.3: 6 residues within 4Å:- Chain A: L.51, L.164, H.168, A.185, Y.189
- Ligands: PGW.5
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.51, A:A.185, A:Y.189, A:Y.189
PGW.4: 1 residues within 4Å:- Ligands: PGW.2
No protein-ligand interaction detected (PLIP)PGW.5: 5 residues within 4Å:- Chain A: Y.44, I.47, L.51, L.58
- Ligands: PGW.3
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Y.44, A:I.47
PGW.6: 6 residues within 4Å:- Chain A: I.163, L.164, I.237
- Chain B: L.224, A.228, L.232
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:I.163, A:L.164, A:I.237, B:L.224, B:A.228, B:L.232
PGW.7: 5 residues within 4Å:- Chain A: L.53, S.121, L.125, G.169, S.176
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.53
PGW.8: 2 residues within 4Å:- Chain A: T.214, V.221
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.221
PGW.10: 9 residues within 4Å:- Chain B: G.186, T.187, Y.189, L.190, F.193
- Chain C: P.213, T.214, V.217
- Ligands: PGW.12
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:Y.189, B:L.190, B:L.190, B:F.193, B:F.193, C:V.217, C:V.217
PGW.11: 6 residues within 4Å:- Chain B: L.51, L.164, H.168, A.185, Y.189
- Ligands: PGW.13
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.51, B:A.185, B:Y.189, B:Y.189
PGW.12: 1 residues within 4Å:- Ligands: PGW.10
No protein-ligand interaction detected (PLIP)PGW.13: 5 residues within 4Å:- Chain B: Y.44, I.47, L.51, L.58
- Ligands: PGW.11
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:Y.44, B:I.47
PGW.14: 5 residues within 4Å:- Chain B: I.163, L.164, I.237
- Chain C: A.228, L.232
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:I.163, B:L.164, B:I.237, C:A.228, C:L.232
PGW.15: 5 residues within 4Å:- Chain B: L.53, S.121, L.125, G.169, S.176
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.53
PGW.16: 2 residues within 4Å:- Chain B: T.214, V.221
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:V.221
PGW.18: 12 residues within 4Å:- Chain C: G.186, T.187, Y.189, L.190, F.193
- Chain D: P.213, T.214, V.217, I.220, V.221, L.224
- Ligands: PGW.20
9 PLIP interactions:5 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:Y.189, C:L.190, C:L.190, C:F.193, C:F.193, D:V.217, D:V.217, D:I.220, D:L.224
PGW.19: 6 residues within 4Å:- Chain C: L.51, L.164, H.168, A.185, Y.189
- Ligands: PGW.21
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:L.51, C:A.185, C:Y.189, C:Y.189
PGW.20: 1 residues within 4Å:- Ligands: PGW.18
No protein-ligand interaction detected (PLIP)PGW.21: 5 residues within 4Å:- Chain C: Y.44, I.47, L.51, L.58
- Ligands: PGW.19
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:Y.44, C:I.47
PGW.22: 6 residues within 4Å:- Chain C: I.163, L.164, I.237
- Chain D: L.224, A.228, L.232
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:L.224, D:A.228, D:L.232, C:I.163, C:L.164, C:I.237
PGW.23: 5 residues within 4Å:- Chain C: L.53, S.121, L.125, G.169, S.176
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.53
PGW.24: 2 residues within 4Å:- Chain C: T.214, V.221
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:V.221
PGW.26: 9 residues within 4Å:- Chain A: P.213, T.214, V.217
- Chain D: G.186, T.187, Y.189, L.190, F.193
- Ligands: PGW.28
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain D- Hydrophobic interactions: A:V.217, A:V.217, D:Y.189, D:L.190, D:L.190, D:F.193, D:F.193
PGW.27: 6 residues within 4Å:- Chain D: L.51, L.164, H.168, A.185, Y.189
- Ligands: PGW.29
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:L.51, D:A.185, D:Y.189, D:Y.189
PGW.28: 1 residues within 4Å:- Ligands: PGW.26
No protein-ligand interaction detected (PLIP)PGW.29: 5 residues within 4Å:- Chain D: Y.44, I.47, L.51, L.58
- Ligands: PGW.27
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:Y.44, D:I.47
PGW.30: 4 residues within 4Å:- Chain A: L.232
- Chain D: I.163, L.164, I.237
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain D- Hydrophobic interactions: A:L.232, D:I.163, D:L.164, D:I.237
PGW.31: 5 residues within 4Å:- Chain D: L.53, S.121, L.125, G.169, S.176
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:L.53
PGW.32: 2 residues within 4Å:- Chain D: T.214, V.221
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:V.221
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, X. et al., Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel. Nat Commun (2022)
- Release Date
- 2022-11-23
- Peptides
- SthK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)
- 28 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, X. et al., Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel. Nat Commun (2022)
- Release Date
- 2022-11-23
- Peptides
- SthK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.