SMTL ID : 7rzc.1 (2 other biounits)

Papain-Like Protease of SARS CoV-2 in complex with Jun9-84-3 inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x JWX: (1R)-N-[(1H-indol-3-yl)methyl]-N-methyl-1-(naphthalen-1-yl)ethan-1-amine(Non-covalent)

JWX.1: 10 residues within 4Å: Chain A: K.160, L.165, G.166, D.167, E.170, P.250, P.251, Y.267, Y.271, Y.276 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:D.167, A:P.251, A:Y.267, A:Y.271, A:Y.271 Hydrogen bonds: A:E.170, A:Y.276 Salt bridges: A:D.167

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.192, C.195, C.227, C.229 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.192, A:C.195, A:C.227, A:C.229

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: K.129, F.130, Q.136 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: T.77, D.79, F.82, R.85, A.156, Y.157, N.159 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.79, A:R.85, A:R.85, A:Y.157, A:N.159 EDO.5: 12 residues within 4Å: Chain A: S.106, C.114, A.117, T.118, L.121, H.275, Y.276, K.277, H.278, I.288, D.289, G.290 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.106, A:H.275, A:G.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Papain-Like Protease of SARS CoV-2 in complex with Jun9-84-3 inhibitor. To be Published

Release Date

2021-09-08

Peptides

Non-structural protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 3

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