SMTL ID : 7rzk.1

Co-soak crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with ADP to 1.9 Angstrom resolution - SAD data

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 24 residues within 4Å: Chain A: N.52, Y.54, P.55, D.58, D.60, T.61, N.64, G.101, N.102, S.103, I.106, V.144, K.146, P.147, V.148, T.151, I.152, L.153, D.205, S.206, G.207 Ligands: MG.2, MG.3, CO.4 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.52, A:D.58, A:N.64, A:N.102, A:N.102, A:S.103, A:K.146, A:V.148, A:T.151, A:I.152, A:D.205, A:S.206, A:S.206, A:G.207, A:G.208 Water bridges: A:V.56, A:N.102 pi-Stacking: A:Y.54

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: N.52, D.58, D.60 Ligands: ADP.1, MG.3, CO.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.58, A:D.60, H2O.2 MG.3: 5 residues within 4Å: Chain A: D.58, D.60 Ligands: ADP.1, MG.2, CO.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.58, A:D.60, H2O.1, H2O.4, H2O.4

6 x CO: COBALT (II) ION(Non-covalent)

CO.4: 5 residues within 4Å: Chain A: D.58, D.60 Ligands: ADP.1, MG.2, MG.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.58, A:D.60, H2O.1, H2O.4, H2O.4 CO.5: 1 residues within 4Å: Chain A: E.123 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.123, H2O.3, H2O.6, H2O.6 CO.6: 1 residues within 4Å: Chain A: E.121 No protein-ligand interaction detected (PLIP) CO.7: 2 residues within 4Å: Chain A: E.74, E.77 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.77 CO.8: 1 residues within 4Å: Chain A: M.145 No protein-ligand interaction detected (PLIP) CO.9: 2 residues within 4Å: Chain A: Q.134, E.138 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuypers, M.G. et al., Co-soak crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with ADP to 1.9 Angstrom resolution - SAD data. To Be Published

Release Date

2022-03-02

Peptides

Fatty Acid Kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty Acid Kinase A

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