SMTL ID : 7rzy.1

CryoEM structure of Vibrio cholerae transposon Tn6677 AAA+ ATPase TnsC

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.50 Å

Oligo State

homo-heptamer

Ligands

7 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)

ATP.1: 20 residues within 4Å: Chain A: A.15, F.16, V.17, S.18, A.50, S.51, G.52, V.53, G.54, K.55, T.56, T.57, E.135, F.209, M.242, R.243, R.246 Chain B: E.41, Q.183, R.187 19 PLIP interactions: 4 interactions with chain B, 15 interactions with chain A Hydrogen bonds: B:Q.183, A:V.17, A:A.50, A:G.52, A:V.53, A:G.54, A:K.55, A:T.56, A:T.56, A:T.56, A:T.57, A:R.246 Salt bridges: B:K.156, B:R.187, B:R.187, A:K.55, A:R.243, A:R.243, A:R.243 ATP.2: 18 residues within 4Å: Chain A: E.41, Q.183, R.187 Chain G: A.15, F.16, V.17, S.18, A.50, G.52, V.53, G.54, K.55, T.56, T.57, F.209, M.242, R.243, R.246 15 PLIP interactions: 14 interactions with chain G, 1 interactions with chain A Hydrogen bonds: G:V.17, G:A.50, G:G.52, G:V.53, G:G.54, G:K.55, G:T.56, G:T.56, G:T.57, G:T.57, G:R.246 Salt bridges: G:R.243, G:R.243, G:R.243, A:R.187 ATP.3: 18 residues within 4Å: Chain B: A.15, F.16, V.17, S.18, G.52, V.53, G.54, K.55, T.56, T.57, E.135, M.242, R.243, R.246 Chain C: E.41, K.156, Q.183, R.187 19 PLIP interactions: 14 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:V.17, B:A.50, B:G.52, B:V.53, B:K.55, B:T.56, B:T.56, B:T.56, B:T.57, B:E.135, B:R.246, C:Q.183 Salt bridges: B:R.243, B:R.243, B:R.243, C:K.156, C:R.187, C:R.187, C:R.187 ATP.4: 19 residues within 4Å: Chain C: K.13, A.15, F.16, V.17, S.18, G.52, V.53, G.54, K.55, T.56, T.57, F.209, M.242, R.243, R.246 Chain D: E.41, K.156, Q.183, R.187 19 PLIP interactions: 5 interactions with chain D, 14 interactions with chain C Hydrogen bonds: D:E.41, D:Q.183, D:R.187, C:K.13, C:V.17, C:G.52, C:V.53, C:G.54, C:K.55, C:T.56, C:T.56, C:T.57, C:T.57, C:R.243, C:R.246 Salt bridges: D:K.156, D:R.187, C:K.55, C:R.243 ATP.5: 19 residues within 4Å: Chain D: K.13, A.15, F.16, V.17, S.18, G.52, V.53, G.54, K.55, T.56, T.57, E.135, F.209, M.242, R.243, R.246 Chain E: E.41, Q.183, R.187 22 PLIP interactions: 19 interactions with chain D, 3 interactions with chain E Hydrogen bonds: D:K.13, D:V.17, D:A.50, D:G.52, D:V.53, D:G.54, D:K.55, D:T.56, D:T.56, D:T.56, D:T.57, D:T.57, D:E.135, D:E.135, D:R.246, E:Q.183, E:R.187 Salt bridges: D:K.55, D:R.243, D:R.243, D:R.243, E:R.187 ATP.6: 18 residues within 4Å: Chain E: A.15, F.16, V.17, S.18, A.50, G.52, V.53, G.54, K.55, T.56, T.57, F.209, M.242, R.243, R.246 Chain F: E.41, Q.183, R.187 19 PLIP interactions: 16 interactions with chain E, 3 interactions with chain F Hydrogen bonds: E:V.17, E:A.50, E:G.52, E:V.53, E:G.54, E:K.55, E:T.56, E:T.56, E:T.56, E:T.57, E:T.57, E:R.246, F:Q.183, F:R.187 Salt bridges: E:K.55, E:R.243, E:R.243, E:R.243, F:R.187 ATP.7: 18 residues within 4Å: Chain F: A.15, F.16, V.17, S.18, A.50, G.52, V.53, G.54, K.55, T.56, T.57, F.209, M.242, R.243, R.246 Chain G: E.41, Q.183, R.187 18 PLIP interactions: 15 interactions with chain F, 3 interactions with chain G Hydrogen bonds: F:V.17, F:A.50, F:G.52, F:V.53, F:G.54, F:K.55, F:T.56, F:T.56, F:T.57, F:T.57, F:R.246, G:Q.183 Salt bridges: F:K.55, F:R.243, F:R.243, F:R.243, G:K.156, G:R.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoffmann, F.T. et al., Selective TnsC recruitment enhances the fidelity of RNA-guided transposition. Nature (2022)

Release Date

2022-06-08

Peptides

Tn6677 Vibrio cholerae transposon TnsC (VchTnsC): ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
5

F
6

G
7

Tn6677 Vibrio cholerae transposon TnsC (VchTnsC)