SMTL ID : 7s07.1

Crystal structure of Epstein-Barr virus glycoprotein gH/gL/gp42-peptide in complex with human neutralizing antibodies 769B10 and 769C2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.43, Y.129, R.191 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.129 Hydrogen bonds: A:N.43, A:R.191 NAG.2: 2 residues within 4Å: Chain A: N.532, T.646 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.646 Hydrogen bonds: A:N.532 NAG.3: 1 residues within 4Å: Chain B: N.18 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.18 NAG.4: 2 residues within 4Å: Chain B: N.27, S.91 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, W.H. et al., Epstein-Barr virus gH/gL has multiple sites of vulnerability for virus neutralization and fusion inhibition. Immunity (2022)

Release Date

2022-11-09

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
Soluble gp42: C
769C2 Fab Heavy chain: D
769C2 Fab Light chain: E
769B10 Fab heavy chain: F
769B10 Fab light chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
X

E
Y

F
H

G
L

Envelope glycoprotein H

Envelope glycoprotein L

Soluble gp42

769C2 Fab Heavy chain

769C2 Fab Light chain

769B10 Fab heavy chain

769B10 Fab light chain

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