SMTL ID : 7s0k.1

HAP2 from Cyanidioschyzon merolae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-MAN.1: 7 residues within 4Å: Chain A: H.81, T.83, N.220, T.222, C.224, T.250, I.252 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.407 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: N.119, W.120, L.183, L.184, N.185, F.186, N.188, T.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.185, A:N.185 GOL.4: 5 residues within 4Å: Chain A: D.361, D.365, Y.366, S.369, Y.382 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.361, A:D.361, A:S.369, A:S.369, A:Y.382, A:Y.382 Water bridges: A:D.361 GOL.5: 7 residues within 4Å: Chain A: N.39, G.40, T.42, S.49, K.86, S.87, R.88 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.40, A:S.49, A:K.86 Water bridges: A:E.38, A:S.49

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 5 residues within 4Å: Chain A: N.103, K.104, D.199, W.304, Q.364 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.103 PEG.7: 4 residues within 4Å: Chain A: G.380, S.381, F.386, F.387 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.380

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, J. et al., Monomeric prefusion structure of an extremophile gamete fusogen and stepwise formation of the postfusion trimeric state. Nat Commun (2022)

Release Date

2022-07-06

Peptides

HAP2-GCS1 domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HAP2-GCS1 domain-containing protein