SMTL ID : 7s0m.1

Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain variant, S723T, bound with non-productive isopentenyl diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)

IPE.1: 8 residues within 4Å: Chain A: G.29, K.30, N.31, M.32, R.33, H.62, R.79, F.189 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:M.32, A:R.33 Hydrogen bonds: A:K.30 Water bridges: A:K.30, A:R.78 Salt bridges: A:K.30, A:K.30, A:R.33, A:H.62, A:H.62, A:R.79 IPE.2: 8 residues within 4Å: Chain B: G.29, K.30, N.31, M.32, R.33, H.62, R.79, F.189 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:K.30, B:M.32, B:R.33 Hydrogen bonds: B:K.30 Water bridges: B:R.78 Salt bridges: B:K.30, B:K.30, B:R.33, B:H.62, B:H.62, B:R.79 IPE.3: 8 residues within 4Å: Chain C: G.29, K.30, N.31, M.32, R.33, H.62, R.79, F.189 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:M.32, C:R.33 Hydrogen bonds: C:K.30 Water bridges: C:K.30, C:R.78 Salt bridges: C:K.30, C:K.30, C:R.33, C:H.62, C:H.62, C:R.79 IPE.4: 8 residues within 4Å: Chain D: G.29, K.30, N.31, M.32, R.33, H.62, R.79, F.189 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:K.30, D:M.32, D:R.33 Hydrogen bonds: D:K.30 Water bridges: D:R.78 Salt bridges: D:K.30, D:K.30, D:R.33, D:H.62, D:H.62, D:R.79 IPE.5: 8 residues within 4Å: Chain E: G.29, K.30, N.31, M.32, R.33, H.62, R.79, F.189 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:M.32, E:R.33 Hydrogen bonds: E:K.30 Water bridges: E:K.30, E:R.78 Salt bridges: E:K.30, E:K.30, E:R.33, E:H.62, E:H.62, E:R.79 IPE.6: 8 residues within 4Å: Chain F: G.29, K.30, N.31, M.32, R.33, H.62, R.79, F.189 11 PLIP interactions: 11 interactions with chain F Hydrophobic interactions: F:K.30, F:M.32, F:R.33 Hydrogen bonds: F:K.30 Water bridges: F:R.78 Salt bridges: F:K.30, F:K.30, F:R.33, F:H.62, F:H.62, F:R.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ronnebaum, T.A. et al., Engineering the Prenyltransferase Domain of a Bifunctional Assembly-Line Terpene Synthase. Biochemistry (2021)

Release Date

2021-10-13

Peptides

Terpene synthase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Terpene synthase