SMTL ID : 7s13.1 (1 other biounit)

Crystal structure of Fab in complex with mouse CD96 dimer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.71, D.72, T.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.71, A:R.71, A:T.73 EDO.2: 4 residues within 4Å: Chain A: P.101 Chain B: R.29, Y.30, Y.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.28, B:Y.30 EDO.3: 7 residues within 4Å: Chain B: E.2, G.23, D.24, E.25, L.26, Y.90, I.97 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.2, B:E.25, B:L.26

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain C: N.87 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, P.S. et al., Antibody blockade of CD96 by distinct molecular mechanisms. Mabs (2021)

Release Date

2021-10-20

Peptides

Fab heavy chain: A
Fab light chain: B
T-cell surface protein tactile: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
D

Fab heavy chain

Fab light chain

T-cell surface protein tactile

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