SMTL ID : 7s4g.4 (3 other biounits)

Fab fragment bound to the Cter peptide of Ly6G6D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ASP- CYS- TYR- LEU- GLY- ASP- LEU- CYS- ASN: Lymphocyte antigen 6 complex locus protein G6d(Non-covalent)

ASP-CYS-TYR-LEU-GLY-ASP-LEU-CYS-ASN.1: 15 residues within 4Å: Chain A: Y.33, V.34, H.36, Y.51, K.60, R.100, N.101 Chain B: L.31, Y.38, W.56, S.97, Y.98, S.99, A.100, Y.102 13 PLIP interactions: 10 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.33, A:V.34, A:Y.51, A:R.100 Hydrogen bonds: A:V.34, B:S.97, B:A.100, B:Y.102 Water bridges: A:T.32, A:Y.51, A:N.101 Salt bridges: A:K.60, A:R.100

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 4 residues within 4Å: Chain A: R.100 Chain B: E.36, W.56, T.59 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Water bridges: A:R.100, A:N.101, B:T.59 Salt bridges: A:R.100, B:E.36, B:E.36

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain B: Q.43, K.51, P.65, F.68, E.87, D.88 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.43, B:Q.43, B:K.51, B:R.67, B:D.88, B:D.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, P. et al., Novel Anti-LY6G6D/CD3 T-Cell-Dependent Bispecific Antibody for the Treatment of Colorectal Cancer. Mol.Cancer Ther. (2022)

Release Date

2022-04-13

Peptides

heavy chain Fab 1G4: A
light chain Fab 1G4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

heavy chain Fab 1G4

light chain Fab 1G4

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