SMTL ID : 7s5f.1 (1 other biounit)

Crystal structure of mannose-6-phosphate reductase from celery (Apium graveolens) leaves with NADP+ and mannonic acid bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 32 residues within 4Å: Chain A: G.17, V.18, W.19, R.20, D.42, Y.47, H.107, F.108, S.160, N.161, Q.182, H.208, T.209, P.210, L.211, G.212, G.213, A.214, A.216, L.227, A.244, I.259, P.260, K.261, S.262, S.263, K.264, R.267, E.270, N.271, N.297 Ligands: CS2.2 37 PLIP interactions: 37 interactions with chain A Hydrophobic interactions: A:H.208 Hydrogen bonds: A:V.18, A:W.19, A:D.42, A:D.42, A:Y.47, A:S.160, A:N.161, A:Q.182, A:T.209, A:L.211, A:G.212, A:G.213, A:G.213, A:A.216, A:K.261, A:S.263, A:E.270, A:N.271 Water bridges: A:R.20, A:R.20, A:S.242, A:S.242, A:A.244, A:S.263, A:S.263, A:R.267, A:R.267, A:R.267, A:R.267, A:R.267 Salt bridges: A:R.20, A:K.261, A:K.264, A:R.267 pi-Stacking: A:H.208 pi-Cation interactions: A:R.267 NAP.3: 33 residues within 4Å: Chain B: G.17, V.18, W.19, R.20, D.42, Y.47, K.76, H.107, F.108, S.160, N.161, Q.182, H.208, T.209, P.210, L.211, G.212, G.213, A.214, A.216, L.227, A.244, I.259, P.260, K.261, S.262, S.263, K.264, R.267, E.270, N.271, N.297 Ligands: CS2.4 36 PLIP interactions: 36 interactions with chain B Hydrophobic interactions: B:H.208 Hydrogen bonds: B:V.18, B:W.19, B:D.42, B:D.42, B:S.160, B:N.161, B:Q.182, B:T.209, B:L.211, B:G.212, B:G.213, B:G.213, B:A.216, B:K.261, B:S.263, B:E.270, B:N.271 Water bridges: B:W.19, B:R.20, B:R.20, B:S.242, B:S.242, B:K.261, B:K.261, B:K.264, B:K.264, B:R.267, B:R.267, B:R.267 Salt bridges: B:R.20, B:K.261, B:K.264, B:R.267 pi-Stacking: B:H.208 pi-Cation interactions: B:R.267

2 x CS2: D-MANNONIC ACID(Non-covalent)

CS2.2: 8 residues within 4Å: Chain A: W.19, D.46, Y.47, W.78, H.107, F.108, N.297 Ligands: NAP.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.46, A:N.297, A:N.297 Water bridges: A:D.46, A:D.46, A:R.220, A:N.297 Salt bridges: A:K.76, A:H.107 CS2.4: 9 residues within 4Å: Chain B: W.19, D.46, Y.47, K.48, W.78, H.107, F.108, N.297 Ligands: NAP.3 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:D.46, B:Y.47, B:K.48, B:K.48, B:N.297, B:N.297 Water bridges: B:S.122, B:N.297 Salt bridges: B:K.76, B:H.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minen, R.I. et al., Structural Determinants of Sugar Alcohol Biosynthesis in Plants: The Crystal Structures of Mannose-6-Phosphate and Aldose-6-Phosphate Reductases. Plant Cell.Physiol. (2022)

Release Date

2022-03-16

Peptides

Manose-6-phosphate reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Manose-6-phosphate reductase

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