- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: T.53, E.78
- Chain B: R.226
- Ligands: ATP.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:T.53
MG.4: 3 residues within 4Å:- Chain A: T.295, E.318
- Ligands: ADP.3
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:T.295
MG.6: 4 residues within 4Å:- Chain A: R.226
- Chain F: T.53, E.78
- Ligands: ATP.5
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:T.53
MG.8: 4 residues within 4Å:- Chain B: T.53, E.78
- Chain C: R.226
- Ligands: ATP.7
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.53
MG.10: 3 residues within 4Å:- Chain B: T.295, E.318
- Ligands: ADP.9
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.295
MG.12: 4 residues within 4Å:- Chain C: T.53, E.78
- Chain D: R.226
- Ligands: ATP.11
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.53
MG.14: 3 residues within 4Å:- Chain C: T.295, E.318
- Ligands: ADP.13
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.295
MG.16: 4 residues within 4Å:- Chain D: T.53, E.78
- Chain E: R.226
- Ligands: ATP.15
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:T.53
MG.18: 3 residues within 4Å:- Chain D: T.295, E.318
- Ligands: ADP.17
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:T.295
MG.19: 4 residues within 4Å:- Chain E: T.53, E.78
- Chain F: R.226
- Ligands: ATP.22
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:T.53
MG.21: 3 residues within 4Å:- Chain E: T.295, E.318
- Ligands: ADP.20
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:T.295
MG.24: 3 residues within 4Å:- Chain F: T.295, E.318
- Ligands: ADP.23
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:T.295
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.3: 20 residues within 4Å:- Chain A: A.289, T.290, G.291, T.292, G.293, K.294, T.295, L.296, S.330, W.331, R.451, I.472, S.473
- Chain B: K.457, M.458, R.459, S.461, W.462, H.463
- Ligands: MG.4
15 PLIP interactions:13 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:G.291, A:T.292, A:T.292, A:G.293, A:K.294, A:T.295, A:T.295, A:T.295, A:L.296, A:S.330, A:R.451, A:R.451, B:M.458, B:H.463
- Salt bridges: A:K.294
ADP.9: 20 residues within 4Å:- Chain B: A.289, T.290, G.291, T.292, G.293, K.294, T.295, L.296, S.330, W.331, R.451, I.472, S.473
- Chain C: K.457, M.458, R.459, S.461, W.462, H.463
- Ligands: MG.10
15 PLIP interactions:13 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:G.291, B:T.292, B:T.292, B:G.293, B:K.294, B:T.295, B:T.295, B:T.295, B:L.296, B:S.330, B:R.451, B:R.451, C:M.458, C:H.463
- Salt bridges: B:K.294
ADP.13: 20 residues within 4Å:- Chain C: A.289, T.290, G.291, T.292, G.293, K.294, T.295, L.296, S.330, W.331, R.451, I.472, S.473
- Chain D: K.457, M.458, R.459, S.461, W.462, H.463
- Ligands: MG.14
15 PLIP interactions:13 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:G.291, C:T.292, C:T.292, C:G.293, C:K.294, C:T.295, C:T.295, C:T.295, C:L.296, C:S.330, C:R.451, C:R.451, D:M.458, D:H.463
- Salt bridges: C:K.294
ADP.17: 20 residues within 4Å:- Chain D: A.289, T.290, G.291, T.292, G.293, K.294, T.295, L.296, S.330, W.331, R.451, I.472, S.473
- Chain E: K.457, M.458, R.459, S.461, W.462, H.463
- Ligands: MG.18
15 PLIP interactions:13 interactions with chain D, 2 interactions with chain E- Hydrogen bonds: D:G.291, D:T.292, D:T.292, D:G.293, D:K.294, D:T.295, D:T.295, D:T.295, D:L.296, D:S.330, D:R.451, D:R.451, E:M.458, E:H.463
- Salt bridges: D:K.294
ADP.20: 20 residues within 4Å:- Chain E: A.289, T.290, G.291, T.292, G.293, K.294, T.295, L.296, S.330, W.331, R.451, I.472, S.473
- Chain F: K.457, M.458, R.459, S.461, W.462, H.463
- Ligands: MG.21
15 PLIP interactions:13 interactions with chain E, 2 interactions with chain F- Hydrogen bonds: E:G.291, E:T.292, E:T.292, E:G.293, E:K.294, E:T.295, E:T.295, E:T.295, E:L.296, E:S.330, E:R.451, E:R.451, F:M.458, F:H.463
- Salt bridges: E:K.294
ADP.23: 20 residues within 4Å:- Chain A: K.457, M.458, R.459, S.461, W.462, H.463
- Chain F: A.289, T.290, G.291, T.292, G.293, K.294, T.295, L.296, S.330, W.331, R.451, I.472, S.473
- Ligands: MG.24
15 PLIP interactions:2 interactions with chain A, 13 interactions with chain F- Hydrogen bonds: A:M.458, A:H.463, F:G.291, F:T.292, F:T.292, F:G.293, F:K.294, F:T.295, F:T.295, F:T.295, F:L.296, F:S.330, F:R.451, F:R.451
- Salt bridges: F:K.294
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Swan, J.A. et al., Coupling of distant ATPase domains in the circadian clock protein KaiC. Nat.Struct.Mol.Biol. (2022)
- Release Date
- 2021-09-22
- Peptides
- Circadian clock protein kinase KaiC: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Swan, J.A. et al., Coupling of distant ATPase domains in the circadian clock protein KaiC. Nat.Struct.Mol.Biol. (2022)
- Release Date
- 2021-09-22
- Peptides
- Circadian clock protein kinase KaiC: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F