SMTL ID : 7s7g.1

Crystal Structure Analysis of Human VLCAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 28 residues within 4Å: Chain A: F.176, L.178, T.179, G.184, S.185, W.211, I.212, S.213, K.261, T.269, I.419, I.422, F.423, T.426, D.428, I.429, L.432, Q.524 Chain B: R.328, Q.330, F.331, I.335, F.338, I.341, Q.397, I.398, G.400, G.401 27 PLIP interactions: 7 interactions with chain B, 20 interactions with chain A Hydrogen bonds: B:Q.330, B:Q.397, B:G.401, A:F.176, A:L.178, A:T.179, A:T.179, A:S.185, A:S.185, A:S.213, A:T.426, A:D.428, A:Q.524 Water bridges: B:R.328, B:M.402, A:T.179, A:S.183, A:G.184, A:E.424, A:T.426 Salt bridges: B:R.328, B:R.328 Hydrophobic interactions: A:W.211, A:K.261, A:I.419, A:I.419 pi-Stacking: A:F.423 FAD.2: 28 residues within 4Å: Chain A: R.328, Q.330, F.331, I.335, F.338, I.341, Q.397, I.398, G.400, G.401 Chain B: F.176, L.178, T.179, G.184, S.185, W.211, I.212, S.213, K.261, T.269, I.419, I.422, F.423, T.426, D.428, I.429, L.432, Q.524 27 PLIP interactions: 20 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:W.211, B:K.261, B:I.419, B:I.419 Hydrogen bonds: B:F.176, B:L.178, B:T.179, B:T.179, B:S.185, B:S.185, B:S.213, B:T.426, B:T.426, B:Q.524, A:Q.330, A:Q.397, A:G.401 Water bridges: B:T.179, B:S.183, B:G.184, B:E.424, B:T.426, A:R.328, A:M.402 pi-Stacking: B:F.423 Salt bridges: A:R.328, A:R.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prew, M.S. et al., Structural basis for defective membrane targeting of mutant enzyme in human VLCAD deficiency. Nat Commun (2022)

Release Date

2022-09-28

Peptides

Very long-chain specific acyl-CoA dehydrogenase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Very long-chain specific acyl-CoA dehydrogenase, mitochondrial