SMTL ID : 7s7r.1

Plasmodium falciparum protein Pf12 bound to nanobody G7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: N.218, S.220, K.222, N.223, E.224 Chain B: F.47 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.47 Hydrogen bonds: A:S.220, A:S.220 Water bridges: A:S.220

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.2: 6 residues within 4Å: Chain A: M.82, F.83, M.84, S.97, F.98, R.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.99 SCN.3: 4 residues within 4Å: Chain B: F.29, S.30, Y.32, N.77 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 1 residues within 4Å: Chain B: N.109 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dietrich, M.H. et al., Structure of the Pf12 and Pf41 heterodimeric complex of Plasmodium falciparum 6-cysteine proteins. FEMS Microbes (2022)

Release Date

2022-03-02

Peptides

Merozoite surface protein P12: A
Nanobody G7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Merozoite surface protein P12

Nanobody G7

Related Entries With Identical Sequence