SMTL ID : 7s94.1 (1 other biounit)

Structure of the core postfusion porcine endogenous retrovirus fusion protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: V.42, N.45 Chain B: V.42, N.45 Chain C: V.42, N.45 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: L.51, L.52, L.54 Chain B: F.53, E.56, A.62 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.52, B:E.56 Water bridges: A:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dean, T.T. et al., Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein. Mbio (2022)

Release Date

2022-01-12

Peptides

Endogenous retrovirus group S71 member 1 Env polyprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Endogenous retrovirus group S71 member 1 Env polyprotein

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