SMTL ID : 7sbc.1

Crystal structure of a GMP synthase from Acinetobacter baumannii AB5075-UW

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: S.240, G.242, D.244, S.245 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.240, A:S.240, A:D.244, A:S.245 Water bridges: A:G.242, A:G.242, A:D.244, A:D.244, A:G.340 PO4.5: 4 residues within 4Å: Chain B: S.240, G.242, D.244, S.245 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.240, B:S.240, B:S.240, B:D.244, B:S.245 Water bridges: B:D.244, B:D.244, B:G.340 PO4.10: 5 residues within 4Å: Chain C: S.240, G.242, V.243, D.244, S.245 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:S.240, C:D.244, C:D.244, C:S.245 Water bridges: C:G.242, C:G.242, C:V.243, C:G.340 PO4.14: 5 residues within 4Å: Chain D: S.240, G.242, V.243, D.244, S.245 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:S.240, D:S.240, D:D.244, D:S.245, D:S.245 Water bridges: D:S.240, D:S.240, D:V.243, D:D.244, D:G.340

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: K.448 Chain D: K.448, T.449, A.450, E.481, T.482 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: K.522, T.526, I.527 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: L.272, N.273, R.430 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain B: K.448 Chain C: K.448, T.449, A.450, E.481, T.482 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: K.522, T.526, I.527 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: L.272, N.273, R.430 Ligand excluded by PLIP CL.11: 6 residues within 4Å: Chain B: K.448, T.449, A.450, E.481, T.482 Chain C: K.448 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain C: K.522, T.526, I.527 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain C: L.272, N.273, R.430 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain A: A.450, E.481, T.482 Chain D: K.448 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain D: K.522, T.526, I.527 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain D: L.272, N.273, R.430 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.15: 1 residues within 4Å: Chain D: K.423 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of a GMP synthase from Acinetobacter baumannii AB5075-UW. To Be Published

Release Date

2021-10-06

Peptides

GMP synthase [glutamine-hydrolyzing]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GMP synthase [glutamine-hydrolyzing]