SMTL ID : 7sbz.2 (1 other biounit)

JAR5 Fab bound to fHbp v1.1 crystallized in space group I422

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

13 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.1: 3 residues within 4Å: Chain A: N.224, K.233, D.235 No protein-ligand interaction detected (PLIP) CD.2: 1 residues within 4Å: Chain A: E.29 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.29 CD.3: 2 residues within 4Å: Chain B: E.190, H.194 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.190, B:H.194 CD.4: 2 residues within 4Å: Chain B: R.82, E.84 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.84, B:E.84 CD.5: 1 residues within 4Å: Chain B: R.193 No protein-ligand interaction detected (PLIP) CD.6: 1 residues within 4Å: Chain B: D.172 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.172, B:D.172 CD.7: 2 residues within 4Å: Chain B: K.108, D.170 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.170 CD.8: 2 residues within 4Å: Chain C: D.195, H.199 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.195, C:H.199 CD.9: 1 residues within 4Å: Chain C: H.132 No protein-ligand interaction detected (PLIP) CD.10: 1 residues within 4Å: Chain C: D.31 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.31, C:D.31 CD.11: 5 residues within 4Å: Chain C: G.24, S.96, H.97, E.131 Ligands: CD.13 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:S.96 CD.12: 1 residues within 4Å: Chain C: D.55 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.55, C:D.55 CD.13: 1 residues within 4Å: Ligands: CD.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chesterman, C. et al., Active Learning for Rapid Design: An iterative AI approach for accelerated vaccine design that combines active machine learning and high-throughput experimental evaluation. To Be Published

Release Date

2022-10-05

Peptides

JAR5 Heavy Chain: A
JAR5 Light Chain: B
Factor H-binding protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
C

JAR5 Heavy Chain

JAR5 Light Chain

Factor H-binding protein

Related Entries With Identical Sequence