SMTL ID : 7scd.1

Ternary complex of fixed-arm Trx-3ost5 (I299E) with 8mer-1 octasaccharide substrate and co-factor product PAP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x BDP- SGN- BDP- SGN- BDP- SGN: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid

BDP-SGN-BDP-SGN-BDP-SGN.1: 16 residues within 4Å: Chain A: R.125, R.130, E.134, E.148, H.150, K.181, P.183, A.184, Q.221, G.225, K.226, C.330, L.331, A.332, S.334, K.335 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.334, A:K.335, A:A.332 Salt bridges: A:R.130, A:K.181, A:K.335, A:R.130

1 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.2: 17 residues within 4Å: Chain A: K.126, G.127, G.128, T.129, R.130, A.131, R.209, S.217, I.285, F.318, Y.319, L.331, S.334, K.335, G.336, R.337, H.339 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:K.126, A:G.127, A:G.128, A:T.129, A:T.129, A:R.130, A:S.217, A:Y.319, A:Y.319, A:G.336, A:R.337 Salt bridges: A:K.126, A:K.126, A:K.181, A:R.209, A:K.335, A:H.339 pi-Stacking: A:F.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wander, R. et al., Structural and Substrate Specificity Analysis of 3-O-Sulfotransferase Isoform 5 to Synthesize Heparan Sulfate. Acs Catalysis (2021)

Release Date

2022-01-19

Peptides

Thioredoxin 1,Heparan sulfate glucosamine 3-O-sulfotransferase 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thioredoxin 1,Heparan sulfate glucosamine 3-O-sulfotransferase 5

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