SMTL ID : 7scn.1

Structure of H1 NC99 influenza hemagglutinin bound to Fab 310-63E6

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.54 Ligand excluded by PLIP NAG.2: 2 residues within 4Å: Chain A: K.22, N.23 Ligand excluded by PLIP NAG.3: 8 residues within 4Å: Chain A: N.64, E.66, E.86, N.87, C.90, C.135, S.136, R.220 Ligand excluded by PLIP NAG.4: 4 residues within 4Å: Chain A: N.125, N.159, L.160, S.161 Ligand excluded by PLIP NAG.5: 4 residues within 4Å: Chain A: N.38, A.284, I.285, N.286 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain E: N.54 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain E: K.22, N.23 Ligand excluded by PLIP NAG.8: 8 residues within 4Å: Chain E: N.64, E.66, E.86, N.87, C.90, C.135, S.136, R.220 Ligand excluded by PLIP NAG.9: 4 residues within 4Å: Chain E: N.125, N.159, L.160, S.161 Ligand excluded by PLIP NAG.10: 4 residues within 4Å: Chain E: N.38, A.284, I.285, N.286 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain I: N.54 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain I: K.22, N.23 Ligand excluded by PLIP NAG.13: 8 residues within 4Å: Chain I: N.64, E.66, E.86, N.87, C.90, C.135, S.136, R.220 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain I: N.125, N.159, L.160, S.161 Ligand excluded by PLIP NAG.15: 4 residues within 4Å: Chain I: N.38, A.284, I.285, N.286 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sangesland, M. et al., Allelic polymorphism controls autoreactivity and vaccine elicitation of human broadly neutralizing antibodies against influenza virus. Immunity (2022)

Release Date

2022-08-24

Peptides

Hemagglutinin HA1 chain: AEI
Hemagglutinin HA2 chain: BFJ
310-63E6 Fab, Heavy Chain: CGK
310-63E6 Fab, Light Chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
C

I
G

B
B

F
D

J
I

C
H

G
E

K
J

D
L

H
F

L
K

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

310-63E6 Fab, Heavy Chain

310-63E6 Fab, Light Chain

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