SMTL ID : 7sco.1

Structure of H1 influenza hemagglutinin bound to Fab 310-39G10

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: N.64, E.66, E.86, N.87, C.90, C.135, S.136, R.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.220 NAG-NAG.2: 8 residues within 4Å: Chain E: N.64, E.66, E.86, N.87, C.90, C.135, S.136, R.220 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.220 NAG-NAG.3: 8 residues within 4Å: Chain I: N.64, E.66, E.86, N.87, C.90, C.135, S.136, R.220 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:R.220

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.11 Chain B: T.19 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 NAG.5: 2 residues within 4Å: Chain A: K.22, N.23 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.22 NAG.6: 3 residues within 4Å: Chain A: G.53, N.54, T.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.54 NAG.7: 2 residues within 4Å: Chain A: P.124, N.125 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.124 NAG.8: 2 residues within 4Å: Chain E: N.11 Chain F: T.19 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.11 NAG.9: 2 residues within 4Å: Chain E: K.22, N.23 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:K.22 NAG.10: 3 residues within 4Å: Chain E: G.53, N.54, T.82 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.54 NAG.11: 2 residues within 4Å: Chain E: P.124, N.125 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:P.124 NAG.12: 2 residues within 4Å: Chain I: N.11 Chain J: T.19 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:N.11 NAG.13: 2 residues within 4Å: Chain I: K.22, N.23 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:K.22 NAG.14: 3 residues within 4Å: Chain I: G.53, N.54, T.82 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:N.54 NAG.15: 2 residues within 4Å: Chain I: P.124, N.125 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:P.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sangesland, M. et al., Allelic polymorphism controls autoreactivity and vaccine elicitation of human broadly neutralizing antibodies against influenza virus. Immunity (2022)

Release Date

2022-08-24

Peptides

Hemagglutinin HA1 chain: AEI
Hemagglutinin HA2 chain: BFJ
310-39G10 Fab, Heavy Chain: CGK
310-39G10 Fab, Light Chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
C

I
G

B
B

F
D

J
I

C
H

G
E

K
J

D
L

H
F

L
K

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

310-39G10 Fab, Heavy Chain

310-39G10 Fab, Light Chain

Related Entries With Identical Sequence