SMTL ID : 7scx.1

KRAS full-length G12V in complex with RGL1 Ras association domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: K.16, S.17, T.35 Ligands: GSP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.17, A:T.35, H2O.1, H2O.2 MG.4: 4 residues within 4Å: Chain C: K.16, S.17, T.35 Ligands: GSP.5 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.17, C:T.35, H2O.6, H2O.7

2 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.2: 28 residues within 4Å: Chain A: A.11, V.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, D.30, E.31, Y.32, D.33, P.34, T.35, T.58, A.59, G.60, Q.61, N.116, K.117, D.119, L.120, S.145, A.146, K.147 Ligands: MG.1 30 PLIP interactions: 30 interactions with chain A Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:K.16, A:S.17, A:A.18, A:E.31, A:E.31, A:T.35, A:T.35, A:T.35, A:G.60, A:N.116, A:K.117, A:K.117, A:S.145, A:A.146, A:K.147 Water bridges: A:S.17, A:S.17, A:T.35, A:T.58, A:Q.61, A:K.147, A:K.147 Salt bridges: A:K.16, A:D.119 pi-Stacking: A:F.28, A:F.28 GSP.5: 28 residues within 4Å: Chain C: A.11, V.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, D.30, E.31, Y.32, D.33, P.34, T.35, T.58, A.59, G.60, Q.61, N.116, K.117, D.119, L.120, S.145, A.146, K.147 Ligands: MG.4 31 PLIP interactions: 31 interactions with chain C Hydrogen bonds: C:G.13, C:V.14, C:G.15, C:K.16, C:K.16, C:S.17, C:A.18, C:D.30, C:E.31, C:E.31, C:T.35, C:T.35, C:T.35, C:G.60, C:N.116, C:K.117, C:K.117, C:S.145, C:A.146, C:K.147 Water bridges: C:S.17, C:S.17, C:T.35, C:T.58, C:Q.61, C:K.147, C:K.147 Salt bridges: C:K.16, C:D.119 pi-Stacking: C:F.28, C:F.28

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: L.23, K.42, V.44, R.149, D.153, Y.157 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.23, A:Y.157 Salt bridges: A:K.42, A:R.149 PO4.6: 6 residues within 4Å: Chain C: L.23, K.42, V.44, R.149, D.153, Y.157 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:L.23, C:Y.157 Salt bridges: C:K.42, C:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eves, B.J. et al., Structures of RGL1 RAS-Association Domain in Complex with KRAS and the Oncogenic G12V Mutant. J.Mol.Biol. (2022)

Release Date

2022-05-18

Peptides

Isoform 2B of GTPase KRas: AC
Ral guanine nucleotide dissociation stimulator-like 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Isoform 2B of GTPase KRas

Ral guanine nucleotide dissociation stimulator-like 1

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